Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_24245 and NOLOHH_24250 overlap by 4 nucleotides NOLOHH_24250 and yubO are separated by 119 nucleotides yubO and flmC are separated by 550 nucleotides flmC and psiA are separated by 212 nucleotides
NOLOHH_24245: NOLOHH_24245 - DUF932 domain-containing protein, at 4,072 to 4,389
_24245
NOLOHH_24250: NOLOHH_24250 - DUF932 domain-containing protein, at 4,386 to 4,892
_24250
NOLOHH_24255: yubO - Uncharacterized protein YubO, at 5,012 to 5,299
yubO
NOLOHH_24260: flmC - Protein FlmC, at 5,850 to 6,062
flmC
NOLOHH_24270: psiA - Protein PsiA, at 6,275 to 6,994
psiA
Position (kb) 5
6 Strain fitness (log2 ratio) -2
-1
0
1 at 4.028 kb on + strand at 4.028 kb on + strand at 4.030 kb on + strand at 4.436 kb on - strand at 4.583 kb on + strand, within NOLOHH_24250 at 4.647 kb on - strand, within NOLOHH_24250 at 4.652 kb on + strand, within NOLOHH_24250 at 4.757 kb on - strand, within NOLOHH_24250 at 4.892 kb on + strand at 4.900 kb on - strand at 4.900 kb on - strand at 5.134 kb on - strand, within yubO at 5.137 kb on + strand, within yubO at 5.137 kb on + strand, within yubO at 5.138 kb on - strand, within yubO at 5.139 kb on + strand, within yubO at 5.139 kb on + strand, within yubO at 5.139 kb on + strand, within yubO at 5.139 kb on + strand, within yubO at 5.284 kb on + strand at 5.586 kb on + strand at 5.726 kb on - strand at 5.726 kb on - strand at 5.775 kb on - strand at 5.775 kb on - strand at 5.847 kb on + strand at 5.847 kb on + strand at 5.848 kb on - strand at 5.848 kb on - strand at 5.862 kb on + strand at 6.095 kb on + strand at 6.183 kb on + strand at 6.190 kb on + strand at 6.190 kb on + strand at 6.192 kb on + strand at 6.192 kb on + strand at 6.192 kb on + strand at 6.193 kb on - strand at 6.193 kb on - strand at 6.193 kb on - strand at 6.193 kb on - strand at 6.193 kb on - strand at 6.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 4,028 + +1.1 4,028 + +0.5 4,030 + -0.9 4,436 - -0.2 4,583 + NOLOHH_24250 0.39 -0.1 4,647 - NOLOHH_24250 0.51 -0.8 4,652 + NOLOHH_24250 0.52 +0.6 4,757 - NOLOHH_24250 0.73 -0.7 4,892 + +0.4 4,900 - +0.7 4,900 - -1.9 5,134 - yubO NOLOHH_24255 0.42 -1.4 5,137 + yubO NOLOHH_24255 0.43 -0.7 5,137 + yubO NOLOHH_24255 0.43 -1.1 5,138 - yubO NOLOHH_24255 0.44 -1.4 5,139 + yubO NOLOHH_24255 0.44 -0.8 5,139 + yubO NOLOHH_24255 0.44 +0.2 5,139 + yubO NOLOHH_24255 0.44 -0.4 5,139 + yubO NOLOHH_24255 0.44 -0.3 5,284 + -0.0 5,586 + +0.2 5,726 - +0.0 5,726 - -0.9 5,775 - -0.6 5,775 - -0.7 5,847 + -1.3 5,847 + -0.2 5,848 - -0.4 5,848 - +0.1 5,862 + -0.4 6,095 + +0.8 6,183 + +0.5 6,190 + +0.3 6,190 + -0.9 6,192 + +0.1 6,192 + -0.1 6,192 + -0.4 6,193 - -0.6 6,193 - +1.0 6,193 - +0.3 6,193 - +0.1 6,193 - -0.3 6,193 - +0.7
Or see this region's nucleotide sequence