Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_22955 and NOLOHH_22960 are separated by 32 nucleotides NOLOHH_22960 and NOLOHH_22965 are separated by 141 nucleotides NOLOHH_22965 and lexA are separated by 116 nucleotides lexA and NOLOHH_22975 are separated by 99 nucleotides
NOLOHH_22955: NOLOHH_22955 - Replication protein O, at 4,524,235 to 4,525,134
_22955
NOLOHH_22960: NOLOHH_22960 - Bacteriophage CII protein, at 4,525,167 to 4,525,463
_22960
NOLOHH_22965: NOLOHH_22965 - XRE family transcriptional regulator, at 4,525,605 to 4,525,820
_22965
NOLOHH_22970: lexA - phage repressor, at 4,525,937 to 4,526,590
lexA
NOLOHH_22975: NOLOHH_22975 - hypothetical protein, at 4,526,690 to 4,527,541
_22975
Position (kb) 4525
4526 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4524.684 kb on + strand, within NOLOHH_22955 at 4524.687 kb on + strand, within NOLOHH_22955 at 4524.687 kb on + strand, within NOLOHH_22955 at 4524.688 kb on - strand, within NOLOHH_22955 at 4524.688 kb on - strand, within NOLOHH_22955 at 4524.688 kb on - strand, within NOLOHH_22955 at 4524.808 kb on - strand, within NOLOHH_22955 at 4524.841 kb on - strand, within NOLOHH_22955 at 4524.841 kb on - strand, within NOLOHH_22955 at 4524.843 kb on + strand, within NOLOHH_22955 at 4524.844 kb on - strand, within NOLOHH_22955 at 4524.863 kb on - strand, within NOLOHH_22955 at 4524.892 kb on + strand, within NOLOHH_22955 at 4524.953 kb on + strand, within NOLOHH_22955 at 4524.954 kb on - strand, within NOLOHH_22955 at 4524.954 kb on - strand, within NOLOHH_22955 at 4524.984 kb on + strand, within NOLOHH_22955 at 4524.984 kb on + strand, within NOLOHH_22955 at 4524.985 kb on - strand, within NOLOHH_22955 at 4525.032 kb on + strand, within NOLOHH_22955 at 4525.032 kb on + strand, within NOLOHH_22955 at 4525.033 kb on - strand, within NOLOHH_22955 at 4525.033 kb on - strand, within NOLOHH_22955 at 4525.033 kb on - strand, within NOLOHH_22955 at 4525.039 kb on + strand, within NOLOHH_22955 at 4525.050 kb on - strand at 4525.075 kb on - strand at 4525.075 kb on - strand at 4525.095 kb on + strand at 4525.115 kb on - strand at 4525.126 kb on - strand at 4525.243 kb on + strand, within NOLOHH_22960 at 4525.397 kb on + strand, within NOLOHH_22960 at 4525.397 kb on + strand, within NOLOHH_22960 at 4525.401 kb on + strand, within NOLOHH_22960 at 4525.447 kb on + strand at 4525.447 kb on + strand at 4525.487 kb on + strand at 4525.502 kb on + strand at 4525.565 kb on + strand at 4525.565 kb on + strand at 4525.659 kb on + strand, within NOLOHH_22965 at 4525.784 kb on + strand, within NOLOHH_22965 at 4525.784 kb on + strand, within NOLOHH_22965 at 4525.784 kb on + strand, within NOLOHH_22965 at 4525.820 kb on + strand at 4525.820 kb on + strand at 4525.820 kb on + strand at 4525.834 kb on + strand at 4526.603 kb on + strand at 4526.781 kb on + strand, within NOLOHH_22975 at 4526.781 kb on + strand, within NOLOHH_22975
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 4,524,684 + NOLOHH_22955 0.50 +0.4 4,524,687 + NOLOHH_22955 0.50 +0.9 4,524,687 + NOLOHH_22955 0.50 -0.0 4,524,688 - NOLOHH_22955 0.50 -0.5 4,524,688 - NOLOHH_22955 0.50 +1.2 4,524,688 - NOLOHH_22955 0.50 -0.3 4,524,808 - NOLOHH_22955 0.64 +0.4 4,524,841 - NOLOHH_22955 0.67 -1.4 4,524,841 - NOLOHH_22955 0.67 +0.5 4,524,843 + NOLOHH_22955 0.68 -2.7 4,524,844 - NOLOHH_22955 0.68 +0.4 4,524,863 - NOLOHH_22955 0.70 -0.3 4,524,892 + NOLOHH_22955 0.73 +0.2 4,524,953 + NOLOHH_22955 0.80 -0.2 4,524,954 - NOLOHH_22955 0.80 +0.3 4,524,954 - NOLOHH_22955 0.80 +0.3 4,524,984 + NOLOHH_22955 0.83 -0.2 4,524,984 + NOLOHH_22955 0.83 -1.5 4,524,985 - NOLOHH_22955 0.83 -0.4 4,525,032 + NOLOHH_22955 0.89 -0.1 4,525,032 + NOLOHH_22955 0.89 +0.1 4,525,033 - NOLOHH_22955 0.89 +0.3 4,525,033 - NOLOHH_22955 0.89 -0.6 4,525,033 - NOLOHH_22955 0.89 +0.3 4,525,039 + NOLOHH_22955 0.89 -2.1 4,525,050 - +0.2 4,525,075 - -1.1 4,525,075 - -0.5 4,525,095 + +0.7 4,525,115 - +0.1 4,525,126 - -1.0 4,525,243 + NOLOHH_22960 0.26 +0.9 4,525,397 + NOLOHH_22960 0.77 -1.4 4,525,397 + NOLOHH_22960 0.77 +1.5 4,525,401 + NOLOHH_22960 0.79 -0.4 4,525,447 + +0.4 4,525,447 + +1.3 4,525,487 + +0.3 4,525,502 + -1.1 4,525,565 + +0.0 4,525,565 + +0.0 4,525,659 + NOLOHH_22965 0.25 -3.3 4,525,784 + NOLOHH_22965 0.83 -1.5 4,525,784 + NOLOHH_22965 0.83 -2.4 4,525,784 + NOLOHH_22965 0.83 +0.8 4,525,820 + +1.4 4,525,820 + -0.6 4,525,820 + -0.4 4,525,834 + +0.3 4,526,603 + +0.8 4,526,781 + NOLOHH_22975 0.11 +0.9 4,526,781 + NOLOHH_22975 0.11 +0.0
Or see this region's nucleotide sequence