Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_19805 and ydaG are separated by 286 nucleotides ydaG and NOLOHH_19815 are separated by 10 nucleotides NOLOHH_19815 and sieB overlap by 4 nucleotides sieB and kilR are separated by 318 nucleotides kilR and ydaE overlap by 1 nucleotides ydaE and racC are separated by 74 nucleotides
NOLOHH_19805: NOLOHH_19805 - transcriptional regulator, at 3,904,876 to 3,905,295
_19805
NOLOHH_19810: ydaG - Uncharacterized protein YdaG, at 3,905,582 to 3,905,716
ydaG
NOLOHH_19815: NOLOHH_19815 - DUF1391 domain-containing protein, at 3,905,727 to 3,905,882
_19815
NOLOHH_19820: sieB - Superinfection exclusion protein B, at 3,905,879 to 3,906,490
sieB
NOLOHH_19825: kilR - killing protein KilR, at 3,906,809 to 3,907,030
kilR
NOLOHH_19830: ydaE - Uncharacterized protein YdaE, at 3,907,030 to 3,907,200
ydaE
NOLOHH_19835: racC - Protein RacC, at 3,907,275 to 3,907,550
racC
Position (kb)
3905
3906
3907 Strain fitness (log2 ratio)
-1
0
1
2 at 3905.477 kb on + strand at 3905.505 kb on + strand at 3905.506 kb on - strand at 3905.579 kb on - strand at 3905.579 kb on - strand at 3906.308 kb on - strand, within sieB at 3906.356 kb on + strand, within sieB at 3906.386 kb on + strand, within sieB at 3907.360 kb on + strand, within racC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 3,905,477 + +0.3 3,905,505 + +1.5 3,905,506 - +0.6 3,905,579 - +0.7 3,905,579 - -0.5 3,906,308 - sieB NOLOHH_19820 0.70 +0.0 3,906,356 + sieB NOLOHH_19820 0.78 -0.3 3,906,386 + sieB NOLOHH_19820 0.83 -1.1 3,907,360 + racC NOLOHH_19835 0.31 +2.1
Or see this region's nucleotide sequence