Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19820

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_19805 and ydaG are separated by 286 nucleotidesydaG and NOLOHH_19815 are separated by 10 nucleotidesNOLOHH_19815 and sieB overlap by 4 nucleotidessieB and kilR are separated by 318 nucleotideskilR and ydaE overlap by 1 nucleotidesydaE and racC are separated by 74 nucleotides NOLOHH_19805: NOLOHH_19805 - transcriptional regulator, at 3,904,876 to 3,905,295 _19805 NOLOHH_19810: ydaG - Uncharacterized protein YdaG, at 3,905,582 to 3,905,716 ydaG NOLOHH_19815: NOLOHH_19815 - DUF1391 domain-containing protein, at 3,905,727 to 3,905,882 _19815 NOLOHH_19820: sieB - Superinfection exclusion protein B, at 3,905,879 to 3,906,490 sieB NOLOHH_19825: kilR - killing protein KilR, at 3,906,809 to 3,907,030 kilR NOLOHH_19830: ydaE - Uncharacterized protein YdaE, at 3,907,030 to 3,907,200 ydaE NOLOHH_19835: racC - Protein RacC, at 3,907,275 to 3,907,550 racC Position (kb) 3905 3906 3907Strain fitness (log2 ratio) -1 0 1 2at 3905.477 kb on + strandat 3905.505 kb on + strandat 3905.506 kb on - strandat 3905.579 kb on - strandat 3905.579 kb on - strandat 3906.308 kb on - strand, within sieBat 3906.356 kb on + strand, within sieBat 3906.386 kb on + strand, within sieBat 3907.360 kb on + strand, within racC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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3,905,477 + +0.3
3,905,505 + +1.5
3,905,506 - +0.6
3,905,579 - +0.7
3,905,579 - -0.5
3,906,308 - sieB NOLOHH_19820 0.70 +0.0
3,906,356 + sieB NOLOHH_19820 0.78 -0.3
3,906,386 + sieB NOLOHH_19820 0.83 -1.1
3,907,360 + racC NOLOHH_19835 0.31 +2.1

Or see this region's nucleotide sequence