Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_19700 and NOLOHH_19705 overlap by 23 nucleotides NOLOHH_19705 and NOLOHH_19710 overlap by 8 nucleotides NOLOHH_19710 and trkG are separated by 137 nucleotides
NOLOHH_19700: NOLOHH_19700 - hypothetical protein, at 3,890,157 to 3,890,366
_19700
NOLOHH_19705: NOLOHH_19705 - ParB-like nuclease, at 3,890,344 to 3,891,276
_19705
NOLOHH_19710: NOLOHH_19710 - transcriptional regulator, at 3,891,269 to 3,892,060
_19710
NOLOHH_19715: trkG - Trk system potassium transporter TrkG, at 3,892,198 to 3,893,622
trkG
Position (kb)
3891
3892
3893 Strain fitness (log2 ratio)
-1
0
1
2 at 3890.426 kb on - strand at 3890.575 kb on - strand, within NOLOHH_19705 at 3890.871 kb on - strand, within NOLOHH_19705 at 3891.036 kb on - strand, within NOLOHH_19705 at 3891.138 kb on - strand, within NOLOHH_19705 at 3891.138 kb on - strand, within NOLOHH_19705 at 3891.138 kb on - strand, within NOLOHH_19705 at 3891.138 kb on - strand, within NOLOHH_19705 at 3891.138 kb on - strand, within NOLOHH_19705 at 3891.277 kb on - strand at 3891.421 kb on - strand, within NOLOHH_19710 at 3891.785 kb on - strand, within NOLOHH_19710 at 3891.899 kb on - strand, within NOLOHH_19710 at 3892.035 kb on + strand at 3892.046 kb on + strand at 3892.061 kb on - strand at 3892.074 kb on - strand at 3892.080 kb on - strand at 3892.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 3,890,426 - +0.3 3,890,575 - NOLOHH_19705 0.25 +0.5 3,890,871 - NOLOHH_19705 0.56 -0.9 3,891,036 - NOLOHH_19705 0.74 -0.9 3,891,138 - NOLOHH_19705 0.85 +0.1 3,891,138 - NOLOHH_19705 0.85 -1.2 3,891,138 - NOLOHH_19705 0.85 -0.8 3,891,138 - NOLOHH_19705 0.85 +1.8 3,891,138 - NOLOHH_19705 0.85 +0.7 3,891,277 - +0.2 3,891,421 - NOLOHH_19710 0.19 -1.3 3,891,785 - NOLOHH_19710 0.65 -1.6 3,891,899 - NOLOHH_19710 0.80 +0.0 3,892,035 + +0.6 3,892,046 + +0.3 3,892,061 - -0.6 3,892,074 - -0.1 3,892,080 - -0.8 3,892,129 - -1.4
Or see this region's nucleotide sequence