Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19710

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_19700 and NOLOHH_19705 overlap by 23 nucleotidesNOLOHH_19705 and NOLOHH_19710 overlap by 8 nucleotidesNOLOHH_19710 and trkG are separated by 137 nucleotides NOLOHH_19700: NOLOHH_19700 - hypothetical protein, at 3,890,157 to 3,890,366 _19700 NOLOHH_19705: NOLOHH_19705 - ParB-like nuclease, at 3,890,344 to 3,891,276 _19705 NOLOHH_19710: NOLOHH_19710 - transcriptional regulator, at 3,891,269 to 3,892,060 _19710 NOLOHH_19715: trkG - Trk system potassium transporter TrkG, at 3,892,198 to 3,893,622 trkG Position (kb) 3891 3892 3893Strain fitness (log2 ratio) -1 0 1 2at 3890.426 kb on - strandat 3890.575 kb on - strand, within NOLOHH_19705at 3890.871 kb on - strand, within NOLOHH_19705at 3891.036 kb on - strand, within NOLOHH_19705at 3891.138 kb on - strand, within NOLOHH_19705at 3891.138 kb on - strand, within NOLOHH_19705at 3891.138 kb on - strand, within NOLOHH_19705at 3891.138 kb on - strand, within NOLOHH_19705at 3891.138 kb on - strand, within NOLOHH_19705at 3891.277 kb on - strandat 3891.421 kb on - strand, within NOLOHH_19710at 3891.785 kb on - strand, within NOLOHH_19710at 3891.899 kb on - strand, within NOLOHH_19710at 3892.035 kb on + strandat 3892.046 kb on + strandat 3892.061 kb on - strandat 3892.074 kb on - strandat 3892.080 kb on - strandat 3892.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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3,890,426 - +0.3
3,890,575 - NOLOHH_19705 0.25 +0.5
3,890,871 - NOLOHH_19705 0.56 -0.9
3,891,036 - NOLOHH_19705 0.74 -0.9
3,891,138 - NOLOHH_19705 0.85 +0.1
3,891,138 - NOLOHH_19705 0.85 -1.2
3,891,138 - NOLOHH_19705 0.85 -0.8
3,891,138 - NOLOHH_19705 0.85 +1.8
3,891,138 - NOLOHH_19705 0.85 +0.7
3,891,277 - +0.2
3,891,421 - NOLOHH_19710 0.19 -1.3
3,891,785 - NOLOHH_19710 0.65 -1.6
3,891,899 - NOLOHH_19710 0.80 +0.0
3,892,035 + +0.6
3,892,046 + +0.3
3,892,061 - -0.6
3,892,074 - -0.1
3,892,080 - -0.8
3,892,129 - -1.4

Or see this region's nucleotide sequence