Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19635

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_19630 and NOLOHH_19635 are separated by 473 nucleotidesNOLOHH_19635 and NOLOHH_19640 are separated by 60 nucleotides NOLOHH_19630: NOLOHH_19630 - phage tail tape measure protein, at 3,876,188 to 3,879,421 _19630 NOLOHH_19635: NOLOHH_19635 - hypothetical protein, at 3,879,895 to 3,880,344 _19635 NOLOHH_19640: NOLOHH_19640 - Phage tail tube protein, at 3,880,405 to 3,881,367 _19640 Position (kb) 3879 3880 3881Strain fitness (log2 ratio) -1 0 1 2at 3878.915 kb on + strand, within NOLOHH_19630at 3878.941 kb on + strand, within NOLOHH_19630at 3879.477 kb on - strandat 3879.678 kb on - strandat 3880.086 kb on - strand, within NOLOHH_19635at 3880.280 kb on - strand, within NOLOHH_19635at 3880.374 kb on - strandat 3880.865 kb on - strand, within NOLOHH_19640at 3881.046 kb on - strand, within NOLOHH_19640at 3881.046 kb on - strand, within NOLOHH_19640at 3881.311 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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3,878,915 + NOLOHH_19630 0.84 +2.5
3,878,941 + NOLOHH_19630 0.85 -0.9
3,879,477 - +0.2
3,879,678 - -0.7
3,880,086 - NOLOHH_19635 0.42 +0.5
3,880,280 - NOLOHH_19635 0.86 -1.4
3,880,374 - +0.9
3,880,865 - NOLOHH_19640 0.48 +1.0
3,881,046 - NOLOHH_19640 0.67 -1.4
3,881,046 - NOLOHH_19640 0.67 -0.3
3,881,311 - +0.0

Or see this region's nucleotide sequence