Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydcR and hicB are separated by 78 nucleotides hicB and hicA are separated by 24 nucleotides hicA and yncJ are separated by 281 nucleotides yncJ and rlhA are separated by 91 nucleotides
NOLOHH_19255: ydcR - Uncharacterized HTH-type transcriptional regulator YdcR, at 3,794,637 to 3,796,043
ydcR
NOLOHH_19260: hicB - type II toxin-antitoxin system antitoxin HicB, at 3,796,122 to 3,796,559
hicB
NOLOHH_19265: hicA - type II toxin-antitoxin system mRNA interferase toxin HicA, at 3,796,584 to 3,796,760
hicA
NOLOHH_19270: yncJ - Uncharacterized protein YncJ, at 3,797,042 to 3,797,212
yncJ
NOLOHH_19275: rlhA - 23S rRNA 5-hydroxycytidine C2501 synthase, at 3,797,304 to 3,799,265
rlhA
Position (kb)
3796
3797 Strain fitness (log2 ratio)
-1
0
1
2 at 3795.460 kb on - strand, within ydcR at 3795.759 kb on - strand, within ydcR at 3795.767 kb on + strand, within ydcR at 3795.850 kb on + strand, within ydcR at 3795.850 kb on + strand, within ydcR at 3795.879 kb on - strand, within ydcR at 3796.012 kb on - strand at 3796.059 kb on - strand at 3796.494 kb on - strand, within hicB at 3796.494 kb on - strand, within hicB at 3796.782 kb on - strand at 3796.782 kb on - strand at 3796.782 kb on - strand at 3796.782 kb on - strand at 3796.784 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 3,795,460 - ydcR NOLOHH_19255 0.58 +2.5 3,795,759 - ydcR NOLOHH_19255 0.80 -1.6 3,795,767 + ydcR NOLOHH_19255 0.80 +0.4 3,795,850 + ydcR NOLOHH_19255 0.86 +1.8 3,795,850 + ydcR NOLOHH_19255 0.86 +0.2 3,795,879 - ydcR NOLOHH_19255 0.88 +0.7 3,796,012 - -0.1 3,796,059 - +2.5 3,796,494 - hicB NOLOHH_19260 0.85 -0.8 3,796,494 - hicB NOLOHH_19260 0.85 -0.6 3,796,782 - -1.0 3,796,782 - -0.7 3,796,782 - +0.9 3,796,782 - +0.0 3,796,784 - +0.5
Or see this region's nucleotide sequence