Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18825

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlsrA and lsrR are separated by 248 nucleotideslsrR and lsrK are separated by 78 nucleotides NOLOHH_18820: lsrA - autoinducer 2 ABC transporter ATP-binding protein LsrA, at 3,682,052 to 3,683,587 lsrA NOLOHH_18825: lsrR - transcriptional regulator LsrR, at 3,683,836 to 3,684,789 lsrR NOLOHH_18830: lsrK - autoinducer-2 kinase, at 3,684,868 to 3,686,460 lsrK Position (kb) 3683 3684 3685Strain fitness (log2 ratio) -1 0 1 2 3at 3682.994 kb on - strand, within lsrAat 3683.074 kb on + strand, within lsrAat 3683.587 kb on + strandat 3683.587 kb on + strandat 3683.676 kb on - strandat 3683.676 kb on - strandat 3683.676 kb on - strandat 3683.676 kb on - strandat 3683.676 kb on - strandat 3683.676 kb on - strandat 3683.770 kb on + strandat 3683.772 kb on + strandat 3683.773 kb on - strandat 3684.027 kb on + strand, within lsrRat 3684.055 kb on + strand, within lsrRat 3684.159 kb on + strand, within lsrRat 3684.303 kb on + strand, within lsrRat 3684.348 kb on + strand, within lsrRat 3684.511 kb on + strand, within lsrRat 3684.644 kb on + strand, within lsrRat 3684.733 kb on + strandat 3684.783 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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3,682,994 - lsrA NOLOHH_18820 0.61 +0.4
3,683,074 + lsrA NOLOHH_18820 0.67 +2.3
3,683,587 + +0.2
3,683,587 + +0.7
3,683,676 - -0.1
3,683,676 - +0.4
3,683,676 - +2.0
3,683,676 - -1.0
3,683,676 - +1.3
3,683,676 - -0.9
3,683,770 + +2.0
3,683,772 + -0.2
3,683,773 - -1.7
3,684,027 + lsrR NOLOHH_18825 0.20 -0.7
3,684,055 + lsrR NOLOHH_18825 0.23 -0.2
3,684,159 + lsrR NOLOHH_18825 0.34 +0.9
3,684,303 + lsrR NOLOHH_18825 0.49 -0.4
3,684,348 + lsrR NOLOHH_18825 0.54 -0.6
3,684,511 + lsrR NOLOHH_18825 0.71 -0.8
3,684,644 + lsrR NOLOHH_18825 0.85 +0.8
3,684,733 + +2.9
3,684,783 + -0.1

Or see this region's nucleotide sequence