Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18375

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdicA and dicC are separated by 83 nucleotidesdicC and NOLOHH_18370 overlap by 17 nucleotidesNOLOHH_18370 and NOLOHH_18375 overlap by 20 nucleotidesNOLOHH_18375 and NOLOHH_18380 are separated by 40 nucleotidesNOLOHH_18380 and tnp-ISNCY are separated by 231 nucleotides NOLOHH_18360: dicA - DNA-binding transcriptional dual regulator DicA, at 3,606,298 to 3,606,705 dicA NOLOHH_18365: dicC - dicB transcriptional regulator DicC, at 3,606,789 to 3,607,019 dicC NOLOHH_18370: NOLOHH_18370 - Putative bacterial toxin ydaT, at 3,607,003 to 3,607,524 _18370 NOLOHH_18375: NOLOHH_18375 - Ybl78, at 3,607,505 to 3,608,470 _18375 NOLOHH_18380: NOLOHH_18380 - DUF977 domain-containing protein, at 3,608,511 to 3,608,732 _18380 NOLOHH_18385: tnp-ISNCY - ISNCY family transposase, at 3,608,964 to 3,610,304 tnp-ISNCY Position (kb) 3607 3608 3609Strain fitness (log2 ratio) -1 0 1 2at 3606.706 kb on - strandat 3606.710 kb on - strandat 3606.710 kb on - strandat 3606.710 kb on - strandat 3606.786 kb on + strandat 3606.872 kb on + strand, within dicCat 3607.049 kb on + strandat 3607.656 kb on - strand, within NOLOHH_18375at 3607.990 kb on + strand, within NOLOHH_18375at 3607.993 kb on + strand, within NOLOHH_18375at 3607.994 kb on - strand, within NOLOHH_18375at 3608.221 kb on + strand, within NOLOHH_18375at 3608.425 kb on + strandat 3608.468 kb on + strandat 3608.468 kb on + strandat 3608.677 kb on + strand, within NOLOHH_18380at 3608.677 kb on + strand, within NOLOHH_18380at 3608.698 kb on + strand, within NOLOHH_18380at 3608.842 kb on + strandat 3608.848 kb on + strandat 3608.906 kb on + strandat 3608.928 kb on + strandat 3609.313 kb on + strand, within tnp-ISNCYat 3609.453 kb on - strand, within tnp-ISNCY

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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3,606,706 - +1.0
3,606,710 - -0.1
3,606,710 - -0.7
3,606,710 - -0.3
3,606,786 + +1.7
3,606,872 + dicC NOLOHH_18365 0.36 +2.4
3,607,049 + -1.1
3,607,656 - NOLOHH_18375 0.16 -0.9
3,607,990 + NOLOHH_18375 0.50 -0.7
3,607,993 + NOLOHH_18375 0.51 -0.4
3,607,994 - NOLOHH_18375 0.51 -0.3
3,608,221 + NOLOHH_18375 0.74 -0.6
3,608,425 + +0.2
3,608,468 + +1.9
3,608,468 + +0.1
3,608,677 + NOLOHH_18380 0.75 -1.1
3,608,677 + NOLOHH_18380 0.75 +0.4
3,608,698 + NOLOHH_18380 0.84 -0.2
3,608,842 + +0.4
3,608,848 + -0.4
3,608,906 + +1.1
3,608,928 + -0.8
3,609,313 + tnp-ISNCY NOLOHH_18385 0.26 -0.9
3,609,453 - tnp-ISNCY NOLOHH_18385 0.36 +0.2

Or see this region's nucleotide sequence