Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dicA and dicC are separated by 83 nucleotides dicC and NOLOHH_18370 overlap by 17 nucleotides NOLOHH_18370 and NOLOHH_18375 overlap by 20 nucleotides NOLOHH_18375 and NOLOHH_18380 are separated by 40 nucleotides NOLOHH_18380 and tnp-ISNCY are separated by 231 nucleotides
NOLOHH_18360: dicA - DNA-binding transcriptional dual regulator DicA, at 3,606,298 to 3,606,705
dicA
NOLOHH_18365: dicC - dicB transcriptional regulator DicC, at 3,606,789 to 3,607,019
dicC
NOLOHH_18370: NOLOHH_18370 - Putative bacterial toxin ydaT, at 3,607,003 to 3,607,524
_18370
NOLOHH_18375: NOLOHH_18375 - Ybl78, at 3,607,505 to 3,608,470
_18375
NOLOHH_18380: NOLOHH_18380 - DUF977 domain-containing protein, at 3,608,511 to 3,608,732
_18380
NOLOHH_18385: tnp-ISNCY - ISNCY family transposase, at 3,608,964 to 3,610,304
tnp-ISNCY
Position (kb)
3607
3608
3609 Strain fitness (log2 ratio)
-1
0
1
2 at 3606.706 kb on - strand at 3606.710 kb on - strand at 3606.710 kb on - strand at 3606.710 kb on - strand at 3606.786 kb on + strand at 3606.872 kb on + strand, within dicC at 3607.049 kb on + strand at 3607.656 kb on - strand, within NOLOHH_18375 at 3607.990 kb on + strand, within NOLOHH_18375 at 3607.993 kb on + strand, within NOLOHH_18375 at 3607.994 kb on - strand, within NOLOHH_18375 at 3608.221 kb on + strand, within NOLOHH_18375 at 3608.425 kb on + strand at 3608.468 kb on + strand at 3608.468 kb on + strand at 3608.677 kb on + strand, within NOLOHH_18380 at 3608.677 kb on + strand, within NOLOHH_18380 at 3608.698 kb on + strand, within NOLOHH_18380 at 3608.842 kb on + strand at 3608.848 kb on + strand at 3608.906 kb on + strand at 3608.928 kb on + strand at 3609.313 kb on + strand, within tnp-ISNCY at 3609.453 kb on - strand, within tnp-ISNCY
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 3,606,706 - +1.0 3,606,710 - -0.1 3,606,710 - -0.7 3,606,710 - -0.3 3,606,786 + +1.7 3,606,872 + dicC NOLOHH_18365 0.36 +2.4 3,607,049 + -1.1 3,607,656 - NOLOHH_18375 0.16 -0.9 3,607,990 + NOLOHH_18375 0.50 -0.7 3,607,993 + NOLOHH_18375 0.51 -0.4 3,607,994 - NOLOHH_18375 0.51 -0.3 3,608,221 + NOLOHH_18375 0.74 -0.6 3,608,425 + +0.2 3,608,468 + +1.9 3,608,468 + +0.1 3,608,677 + NOLOHH_18380 0.75 -1.1 3,608,677 + NOLOHH_18380 0.75 +0.4 3,608,698 + NOLOHH_18380 0.84 -0.2 3,608,842 + +0.4 3,608,848 + -0.4 3,608,906 + +1.1 3,608,928 + -0.8 3,609,313 + tnp-ISNCY NOLOHH_18385 0.26 -0.9 3,609,453 - tnp-ISNCY NOLOHH_18385 0.36 +0.2
Or see this region's nucleotide sequence