Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmE and chbB are separated by 298 nucleotides chbB and chbC are separated by 84 nucleotides chbC and chbA are separated by 50 nucleotides chbA and chbR are separated by 10 nucleotides
NOLOHH_17470: osmE - osmotically-inducible lipoprotein OsmE, at 3,429,670 to 3,430,008
osmE
NOLOHH_17475: chbB - PTS N,N'-diacetylchitobiose transporter subunit IIB, at 3,430,307 to 3,430,627
chbB
NOLOHH_17480: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 3,430,712 to 3,432,070
chbC
NOLOHH_17485: chbA - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 3,432,121 to 3,432,471
chbA
NOLOHH_17490: chbR - transcriptional regulator ChbR, at 3,432,482 to 3,433,321
chbR
Position (kb)
3430
3431
3432
3433 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3429.732 kb on + strand, within osmE at 3429.739 kb on + strand, within osmE at 3429.880 kb on + strand, within osmE at 3429.979 kb on + strand at 3430.006 kb on + strand at 3430.031 kb on + strand at 3430.168 kb on + strand at 3430.325 kb on + strand at 3430.855 kb on + strand, within chbC at 3431.104 kb on + strand, within chbC at 3431.104 kb on + strand, within chbC at 3431.120 kb on + strand, within chbC at 3431.765 kb on - strand, within chbC at 3431.802 kb on + strand, within chbC at 3431.841 kb on - strand, within chbC at 3431.973 kb on + strand at 3431.978 kb on + strand at 3432.120 kb on + strand at 3432.120 kb on + strand at 3432.401 kb on + strand, within chbA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 3,429,732 + osmE NOLOHH_17470 0.18 -2.1 3,429,739 + osmE NOLOHH_17470 0.20 +0.7 3,429,880 + osmE NOLOHH_17470 0.62 +0.7 3,429,979 + -0.0 3,430,006 + +1.8 3,430,031 + +0.2 3,430,168 + -1.5 3,430,325 + -0.1 3,430,855 + chbC NOLOHH_17480 0.11 +0.9 3,431,104 + chbC NOLOHH_17480 0.29 -0.5 3,431,104 + chbC NOLOHH_17480 0.29 +0.4 3,431,120 + chbC NOLOHH_17480 0.30 +0.5 3,431,765 - chbC NOLOHH_17480 0.77 -0.3 3,431,802 + chbC NOLOHH_17480 0.80 +1.5 3,431,841 - chbC NOLOHH_17480 0.83 -1.5 3,431,973 + -0.2 3,431,978 + +0.8 3,432,120 + +1.9 3,432,120 + -1.1 3,432,401 + chbA NOLOHH_17485 0.80 -0.4
Or see this region's nucleotide sequence