Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13300

Experiment: Bas38

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntiscS and iscU are separated by 27 nucleotidesiscU and iscA are separated by 16 nucleotidesiscA and hscB are separated by 95 nucleotideshscB and hscA are separated by 16 nucleotides NOLOHH_13290: iscS - cysteine desulfurase, at 2,576,749 to 2,577,963 iscS NOLOHH_13295: iscU - Iron-sulfur cluster assembly scaffold protein IscU, at 2,577,991 to 2,578,377 iscU NOLOHH_13300: iscA - iron-sulfur cluster assembly protein IscA, at 2,578,394 to 2,578,717 iscA NOLOHH_13305: hscB - co-chaperone HscB, at 2,578,813 to 2,579,328 hscB NOLOHH_13310: hscA - Fe-S protein assembly chaperone HscA, at 2,579,345 to 2,581,195 hscA Position (kb) 2578 2579Strain fitness (log2 ratio) -2 -1 0 1at 2578.311 kb on + strand, within iscUat 2578.353 kb on + strandat 2578.353 kb on + strandat 2578.353 kb on + strandat 2578.393 kb on + strandat 2578.431 kb on + strand, within iscAat 2578.435 kb on + strand, within iscAat 2578.511 kb on + strand, within iscAat 2578.515 kb on + strand, within iscAat 2578.892 kb on + strand, within hscBat 2579.590 kb on + strand, within hscA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
remove
2,578,311 + iscU NOLOHH_13295 0.83 -0.6
2,578,353 + -0.7
2,578,353 + -1.3
2,578,353 + -0.4
2,578,393 + +0.1
2,578,431 + iscA NOLOHH_13300 0.11 +0.4
2,578,435 + iscA NOLOHH_13300 0.13 -1.8
2,578,511 + iscA NOLOHH_13300 0.36 -1.3
2,578,515 + iscA NOLOHH_13300 0.37 -0.3
2,578,892 + hscB NOLOHH_13305 0.15 -0.6
2,579,590 + hscA NOLOHH_13310 0.13 -0.1

Or see this region's nucleotide sequence