Strain Fitness in Escherichia coli ECOR27 around NOLOHH_12770

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and NOLOHH_12770 are separated by 151 nucleotidesNOLOHH_12770 and NOLOHH_12775 are separated by 1 nucleotides NOLOHH_12765: tnp-IS3 - IS3 family IS3 transposase, at 2,475,617 to 2,476,483 tnp-IS3 NOLOHH_12770: NOLOHH_12770 - ATP-binding protein, at 2,476,635 to 2,478,353 _12770 NOLOHH_12775: NOLOHH_12775 - Response-reg-2 domain-containing protein, at 2,478,355 to 2,480,103 _12775 Position (kb) 2476 2477 2478 2479Strain fitness (log2 ratio) -2 -1 0 1at 2476.495 kb on + strandat 2476.498 kb on + strandat 2476.498 kb on + strandat 2476.571 kb on + strandat 2476.572 kb on - strandat 2476.610 kb on + strandat 2477.113 kb on - strand, within NOLOHH_12770at 2477.615 kb on + strand, within NOLOHH_12770at 2478.175 kb on + strand, within NOLOHH_12770at 2478.758 kb on + strand, within NOLOHH_12775

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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2,476,495 + +0.1
2,476,498 + +0.6
2,476,498 + -1.8
2,476,571 + -0.9
2,476,572 - -0.6
2,476,610 + -0.0
2,477,113 - NOLOHH_12770 0.28 -1.6
2,477,615 + NOLOHH_12770 0.57 -1.6
2,478,175 + NOLOHH_12770 0.90 +0.2
2,478,758 + NOLOHH_12775 0.23 +0.1

Or see this region's nucleotide sequence