Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjfM and yjfL are separated by 9 nucleotides yjfL and NOLOHH_04460 are separated by 17 nucleotides NOLOHH_04460 and NOLOHH_04465 overlap by 22 nucleotides NOLOHH_04465 and yjfJ are separated by 50 nucleotides
NOLOHH_04450: yjfM - Uncharacterized protein YjfM, at 805,871 to 806,509
yjfM
NOLOHH_04455: yjfL - UPF0719 inner membrane protein YjfL, at 806,519 to 806,917
yjfL
NOLOHH_04460: NOLOHH_04460 - DUF2491 domain-containing protein, at 806,935 to 807,087
_04460
NOLOHH_04465: NOLOHH_04465 - DUF2491 domain-containing protein, at 807,066 to 807,593
_04465
NOLOHH_04470: yjfJ - Uncharacterized protein YjfJ, at 807,644 to 808,342
yjfJ
Position (kb) 806
807
808 Strain fitness (log2 ratio) -2
-1
0
1 at 805.949 kb on - strand, within yjfM at 805.966 kb on - strand, within yjfM at 805.966 kb on - strand, within yjfM at 805.966 kb on - strand, within yjfM at 806.001 kb on + strand, within yjfM at 806.061 kb on + strand, within yjfM at 806.061 kb on + strand, within yjfM at 806.087 kb on - strand, within yjfM at 806.151 kb on + strand, within yjfM at 806.152 kb on - strand, within yjfM at 806.170 kb on + strand, within yjfM at 806.171 kb on - strand, within yjfM at 806.171 kb on - strand, within yjfM at 806.171 kb on - strand, within yjfM at 806.171 kb on - strand, within yjfM at 806.194 kb on + strand, within yjfM at 806.195 kb on - strand, within yjfM at 806.263 kb on + strand, within yjfM at 806.264 kb on - strand, within yjfM at 806.278 kb on + strand, within yjfM at 806.278 kb on + strand, within yjfM at 806.390 kb on + strand, within yjfM at 806.391 kb on - strand, within yjfM at 806.603 kb on - strand, within yjfL at 806.631 kb on + strand, within yjfL at 806.631 kb on + strand, within yjfL at 806.632 kb on - strand, within yjfL at 806.632 kb on - strand, within yjfL at 806.694 kb on + strand, within yjfL at 806.912 kb on - strand at 807.019 kb on - strand, within NOLOHH_04460 at 807.038 kb on - strand, within NOLOHH_04460 at 807.053 kb on + strand, within NOLOHH_04460 at 807.145 kb on + strand, within NOLOHH_04465 at 807.145 kb on + strand, within NOLOHH_04465 at 807.146 kb on - strand, within NOLOHH_04465 at 807.146 kb on - strand, within NOLOHH_04465 at 807.213 kb on + strand, within NOLOHH_04465 at 807.269 kb on + strand, within NOLOHH_04465 at 807.270 kb on - strand, within NOLOHH_04465 at 807.280 kb on + strand, within NOLOHH_04465 at 807.280 kb on + strand, within NOLOHH_04465 at 807.292 kb on + strand, within NOLOHH_04465 at 807.327 kb on - strand, within NOLOHH_04465 at 807.327 kb on - strand, within NOLOHH_04465 at 807.376 kb on + strand, within NOLOHH_04465 at 807.376 kb on + strand, within NOLOHH_04465 at 807.377 kb on - strand, within NOLOHH_04465 at 807.377 kb on - strand, within NOLOHH_04465 at 807.377 kb on - strand, within NOLOHH_04465 at 807.380 kb on - strand, within NOLOHH_04465 at 807.545 kb on + strand at 807.554 kb on + strand at 807.555 kb on - strand at 807.593 kb on + strand at 807.593 kb on + strand at 807.594 kb on - strand at 807.609 kb on + strand at 807.609 kb on + strand at 807.675 kb on - strand at 807.675 kb on - strand at 807.675 kb on - strand at 807.677 kb on + strand at 807.677 kb on + strand at 807.677 kb on + strand at 807.677 kb on + strand at 807.678 kb on - strand at 807.678 kb on - strand at 807.678 kb on - strand at 807.678 kb on - strand at 807.678 kb on - strand at 807.697 kb on + strand at 807.697 kb on + strand at 807.698 kb on - strand at 807.698 kb on - strand at 807.824 kb on + strand, within yjfJ at 807.879 kb on - strand, within yjfJ at 807.879 kb on - strand, within yjfJ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 805,949 - yjfM NOLOHH_04450 0.12 -0.8 805,966 - yjfM NOLOHH_04450 0.15 -0.1 805,966 - yjfM NOLOHH_04450 0.15 -1.8 805,966 - yjfM NOLOHH_04450 0.15 +0.2 806,001 + yjfM NOLOHH_04450 0.20 +1.4 806,061 + yjfM NOLOHH_04450 0.30 +1.0 806,061 + yjfM NOLOHH_04450 0.30 -0.8 806,087 - yjfM NOLOHH_04450 0.34 -0.1 806,151 + yjfM NOLOHH_04450 0.44 +0.9 806,152 - yjfM NOLOHH_04450 0.44 -1.4 806,170 + yjfM NOLOHH_04450 0.47 -0.5 806,171 - yjfM NOLOHH_04450 0.47 -1.8 806,171 - yjfM NOLOHH_04450 0.47 +0.2 806,171 - yjfM NOLOHH_04450 0.47 +0.5 806,171 - yjfM NOLOHH_04450 0.47 -0.1 806,194 + yjfM NOLOHH_04450 0.51 +0.1 806,195 - yjfM NOLOHH_04450 0.51 +1.1 806,263 + yjfM NOLOHH_04450 0.61 -0.8 806,264 - yjfM NOLOHH_04450 0.62 +0.0 806,278 + yjfM NOLOHH_04450 0.64 -0.4 806,278 + yjfM NOLOHH_04450 0.64 +0.6 806,390 + yjfM NOLOHH_04450 0.81 -0.1 806,391 - yjfM NOLOHH_04450 0.81 -1.3 806,603 - yjfL NOLOHH_04455 0.21 -0.7 806,631 + yjfL NOLOHH_04455 0.28 -0.8 806,631 + yjfL NOLOHH_04455 0.28 -0.0 806,632 - yjfL NOLOHH_04455 0.28 +0.2 806,632 - yjfL NOLOHH_04455 0.28 -0.0 806,694 + yjfL NOLOHH_04455 0.44 +0.8 806,912 - -0.1 807,019 - NOLOHH_04460 0.55 -0.7 807,038 - NOLOHH_04460 0.67 -0.8 807,053 + NOLOHH_04460 0.77 -1.6 807,145 + NOLOHH_04465 0.15 +0.3 807,145 + NOLOHH_04465 0.15 -0.5 807,146 - NOLOHH_04465 0.15 -1.4 807,146 - NOLOHH_04465 0.15 -0.9 807,213 + NOLOHH_04465 0.28 -0.9 807,269 + NOLOHH_04465 0.38 +1.7 807,270 - NOLOHH_04465 0.39 +0.4 807,280 + NOLOHH_04465 0.41 -0.2 807,280 + NOLOHH_04465 0.41 -0.5 807,292 + NOLOHH_04465 0.43 -0.5 807,327 - NOLOHH_04465 0.49 +0.8 807,327 - NOLOHH_04465 0.49 +1.3 807,376 + NOLOHH_04465 0.59 +0.8 807,376 + NOLOHH_04465 0.59 -0.6 807,377 - NOLOHH_04465 0.59 -1.0 807,377 - NOLOHH_04465 0.59 +0.6 807,377 - NOLOHH_04465 0.59 +0.3 807,380 - NOLOHH_04465 0.59 +0.6 807,545 + -0.3 807,554 + -0.2 807,555 - +0.3 807,593 + -0.1 807,593 + +0.3 807,594 - +0.4 807,609 + +0.6 807,609 + +0.3 807,675 - -1.7 807,675 - +0.5 807,675 - -1.1 807,677 + -1.6 807,677 + +0.0 807,677 + -0.1 807,677 + +0.4 807,678 - -0.3 807,678 - -0.6 807,678 - -0.2 807,678 - +0.4 807,678 - -1.1 807,697 + -0.4 807,697 + +0.4 807,698 - +0.1 807,698 - -0.3 807,824 + yjfJ NOLOHH_04470 0.26 -2.5 807,879 - yjfJ NOLOHH_04470 0.34 +0.1 807,879 - yjfJ NOLOHH_04470 0.34 +0.1
Or see this region's nucleotide sequence