Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yadS and erpA are separated by 46 nucleotides erpA and yadW overlap by 8 nucleotides yadW and clcA are separated by 23 nucleotides
NOLOHH_02620: yadS - UPF0126 inner membrane protein YadS, at 432,049 to 432,672
yadS
NOLOHH_02625: erpA - iron-sulfur cluster insertion protein ErpA, at 432,719 to 433,063
erpA
NOLOHH_02630: yadW - Protein YadW, at 433,056 to 433,121
yadW
NOLOHH_02635: clcA - H(+)/Cl(-) exchange transporter ClcA, at 433,145 to 434,566
clcA
Position (kb) 433
434 Strain fitness (log2 ratio) -2
-1
0
1 at 432.071 kb on + strand at 432.071 kb on + strand at 432.071 kb on + strand at 432.072 kb on - strand at 432.087 kb on - strand at 432.412 kb on - strand, within yadS at 432.510 kb on + strand, within yadS at 432.576 kb on + strand, within yadS at 432.576 kb on + strand, within yadS at 432.577 kb on - strand, within yadS at 432.633 kb on + strand at 432.633 kb on + strand at 432.634 kb on - strand at 432.692 kb on + strand at 432.720 kb on + strand at 432.721 kb on - strand at 432.721 kb on - strand at 432.721 kb on - strand at 432.721 kb on - strand at 432.721 kb on - strand at 432.721 kb on - strand at 432.727 kb on + strand at 433.110 kb on - strand, within yadW at 433.123 kb on - strand at 433.123 kb on - strand at 433.126 kb on + strand at 433.193 kb on - strand at 433.193 kb on - strand at 433.193 kb on - strand at 433.193 kb on - strand at 433.234 kb on - strand at 433.265 kb on + strand at 433.266 kb on - strand at 433.266 kb on - strand at 433.266 kb on - strand at 433.311 kb on + strand, within clcA at 433.311 kb on + strand, within clcA at 433.312 kb on - strand, within clcA at 433.312 kb on - strand, within clcA at 433.312 kb on - strand, within clcA at 433.533 kb on - strand, within clcA at 433.533 kb on - strand, within clcA at 433.533 kb on - strand, within clcA at 433.533 kb on - strand, within clcA at 433.533 kb on - strand, within clcA at 433.562 kb on - strand, within clcA at 433.562 kb on - strand, within clcA at 433.703 kb on - strand, within clcA at 433.759 kb on + strand, within clcA at 433.766 kb on - strand, within clcA at 433.787 kb on - strand, within clcA at 433.816 kb on + strand, within clcA at 433.817 kb on - strand, within clcA at 433.817 kb on - strand, within clcA at 433.819 kb on + strand, within clcA at 433.820 kb on - strand, within clcA at 433.840 kb on + strand, within clcA at 433.885 kb on + strand, within clcA at 433.885 kb on + strand, within clcA at 433.886 kb on - strand, within clcA at 433.886 kb on - strand, within clcA at 433.886 kb on - strand, within clcA at 433.886 kb on - strand, within clcA at 433.886 kb on - strand, within clcA at 433.898 kb on - strand, within clcA at 433.910 kb on - strand, within clcA at 433.932 kb on - strand, within clcA at 433.936 kb on + strand, within clcA at 433.937 kb on - strand, within clcA at 433.937 kb on - strand, within clcA at 433.970 kb on - strand, within clcA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 432,071 + +0.7 432,071 + +0.0 432,071 + +0.2 432,072 - +0.6 432,087 - -1.1 432,412 - yadS NOLOHH_02620 0.58 -1.5 432,510 + yadS NOLOHH_02620 0.74 +0.0 432,576 + yadS NOLOHH_02620 0.84 +1.2 432,576 + yadS NOLOHH_02620 0.84 -0.8 432,577 - yadS NOLOHH_02620 0.85 -0.6 432,633 + +0.1 432,633 + -2.7 432,634 - -0.1 432,692 + -0.2 432,720 + -0.3 432,721 - +0.5 432,721 - -0.2 432,721 - -0.9 432,721 - +0.1 432,721 - -0.1 432,721 - +0.4 432,727 + -0.1 433,110 - yadW NOLOHH_02630 0.82 -1.2 433,123 - +1.7 433,123 - -0.0 433,126 + -1.2 433,193 - -0.4 433,193 - -0.3 433,193 - +1.1 433,193 - +0.6 433,234 - -0.3 433,265 + -0.7 433,266 - -0.3 433,266 - -0.2 433,266 - +1.3 433,311 + clcA NOLOHH_02635 0.12 +0.4 433,311 + clcA NOLOHH_02635 0.12 +0.2 433,312 - clcA NOLOHH_02635 0.12 -1.1 433,312 - clcA NOLOHH_02635 0.12 +0.1 433,312 - clcA NOLOHH_02635 0.12 -0.3 433,533 - clcA NOLOHH_02635 0.27 -0.4 433,533 - clcA NOLOHH_02635 0.27 +0.7 433,533 - clcA NOLOHH_02635 0.27 -0.1 433,533 - clcA NOLOHH_02635 0.27 -0.0 433,533 - clcA NOLOHH_02635 0.27 +0.0 433,562 - clcA NOLOHH_02635 0.29 +0.1 433,562 - clcA NOLOHH_02635 0.29 +0.1 433,703 - clcA NOLOHH_02635 0.39 +0.5 433,759 + clcA NOLOHH_02635 0.43 -0.9 433,766 - clcA NOLOHH_02635 0.44 +0.7 433,787 - clcA NOLOHH_02635 0.45 +0.9 433,816 + clcA NOLOHH_02635 0.47 -0.0 433,817 - clcA NOLOHH_02635 0.47 -0.4 433,817 - clcA NOLOHH_02635 0.47 +0.2 433,819 + clcA NOLOHH_02635 0.47 -0.4 433,820 - clcA NOLOHH_02635 0.47 +0.4 433,840 + clcA NOLOHH_02635 0.49 -0.4 433,885 + clcA NOLOHH_02635 0.52 -0.0 433,885 + clcA NOLOHH_02635 0.52 +0.7 433,886 - clcA NOLOHH_02635 0.52 +0.5 433,886 - clcA NOLOHH_02635 0.52 +0.4 433,886 - clcA NOLOHH_02635 0.52 -0.7 433,886 - clcA NOLOHH_02635 0.52 -0.5 433,886 - clcA NOLOHH_02635 0.52 +0.1 433,898 - clcA NOLOHH_02635 0.53 +0.0 433,910 - clcA NOLOHH_02635 0.54 -0.3 433,932 - clcA NOLOHH_02635 0.55 -0.4 433,936 + clcA NOLOHH_02635 0.56 -0.1 433,937 - clcA NOLOHH_02635 0.56 +0.3 433,937 - clcA NOLOHH_02635 0.56 -0.9 433,970 - clcA NOLOHH_02635 0.58 +0.7
Or see this region's nucleotide sequence