Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt betA and NOLOHH_01905 are separated by 212 nucleotides NOLOHH_01905 and lutC are separated by 245 nucleotides lutC and ykgF overlap by 8 nucleotides
NOLOHH_01900: betA - choline dehydrogenase, at 283,047 to 284,717
betA
NOLOHH_01905: NOLOHH_01905 - Uncharacterized protein YkgH, at 284,930 to 285,595
_01905
NOLOHH_01910: lutC - lactate utilization protein C, at 285,841 to 286,536
lutC
NOLOHH_01915: ykgF - LutB/LldF family L-lactate oxidation iron-sulfur protein, at 286,529 to 287,956
ykgF
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 283.953 kb on + strand, within betA at 283.953 kb on + strand, within betA at 283.953 kb on + strand, within betA at 283.953 kb on + strand, within betA at 283.953 kb on + strand, within betA at 283.953 kb on + strand, within betA at 283.954 kb on - strand, within betA at 283.954 kb on - strand, within betA at 283.954 kb on - strand, within betA at 283.954 kb on - strand, within betA at 283.954 kb on - strand, within betA at 283.963 kb on - strand, within betA at 284.090 kb on + strand, within betA at 284.091 kb on - strand, within betA at 284.157 kb on + strand, within betA at 284.243 kb on + strand, within betA at 284.286 kb on + strand, within betA at 284.286 kb on + strand, within betA at 284.286 kb on + strand, within betA at 284.286 kb on + strand, within betA at 284.286 kb on + strand, within betA at 284.286 kb on + strand, within betA at 284.287 kb on - strand, within betA at 284.287 kb on - strand, within betA at 284.287 kb on - strand, within betA at 284.287 kb on - strand, within betA at 284.287 kb on - strand, within betA at 284.287 kb on - strand, within betA at 284.568 kb on - strand at 284.579 kb on + strand at 284.579 kb on + strand at 284.609 kb on + strand at 284.609 kb on + strand at 284.610 kb on - strand at 284.610 kb on - strand at 284.610 kb on - strand at 284.677 kb on - strand at 284.732 kb on + strand at 284.760 kb on + strand at 284.789 kb on + strand at 284.790 kb on - strand at 284.791 kb on + strand at 284.791 kb on + strand at 284.794 kb on - strand at 284.927 kb on - strand at 285.231 kb on + strand, within NOLOHH_01905 at 285.285 kb on + strand, within NOLOHH_01905 at 285.329 kb on + strand, within NOLOHH_01905 at 285.629 kb on + strand at 285.697 kb on + strand at 285.801 kb on + strand at 285.833 kb on + strand at 285.834 kb on - strand at 285.864 kb on - strand at 285.945 kb on + strand, within lutC at 286.023 kb on + strand, within lutC at 286.024 kb on - strand, within lutC at 286.033 kb on - strand, within lutC at 286.033 kb on - strand, within lutC at 286.124 kb on - strand, within lutC at 286.139 kb on + strand, within lutC at 286.140 kb on - strand, within lutC at 286.140 kb on - strand, within lutC at 286.155 kb on + strand, within lutC at 286.303 kb on - strand, within lutC at 286.313 kb on - strand, within lutC at 286.365 kb on + strand, within lutC at 286.366 kb on - strand, within lutC at 286.366 kb on - strand, within lutC at 286.366 kb on - strand, within lutC at 286.366 kb on - strand, within lutC at 286.413 kb on + strand, within lutC at 286.439 kb on + strand, within lutC at 286.440 kb on - strand, within lutC at 286.440 kb on - strand, within lutC at 286.440 kb on - strand, within lutC at 286.440 kb on - strand, within lutC at 286.440 kb on - strand, within lutC at 286.565 kb on - strand at 286.574 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 283,953 + betA NOLOHH_01900 0.54 +0.9 283,953 + betA NOLOHH_01900 0.54 +0.2 283,953 + betA NOLOHH_01900 0.54 +1.4 283,953 + betA NOLOHH_01900 0.54 -0.2 283,953 + betA NOLOHH_01900 0.54 -0.1 283,953 + betA NOLOHH_01900 0.54 -0.1 283,954 - betA NOLOHH_01900 0.54 -0.0 283,954 - betA NOLOHH_01900 0.54 +0.3 283,954 - betA NOLOHH_01900 0.54 +1.2 283,954 - betA NOLOHH_01900 0.54 +0.3 283,954 - betA NOLOHH_01900 0.54 +1.0 283,963 - betA NOLOHH_01900 0.55 +0.4 284,090 + betA NOLOHH_01900 0.62 +1.4 284,091 - betA NOLOHH_01900 0.62 +0.2 284,157 + betA NOLOHH_01900 0.66 -2.2 284,243 + betA NOLOHH_01900 0.72 -0.5 284,286 + betA NOLOHH_01900 0.74 +1.4 284,286 + betA NOLOHH_01900 0.74 +0.7 284,286 + betA NOLOHH_01900 0.74 +2.1 284,286 + betA NOLOHH_01900 0.74 -0.3 284,286 + betA NOLOHH_01900 0.74 -1.3 284,286 + betA NOLOHH_01900 0.74 -0.4 284,287 - betA NOLOHH_01900 0.74 -0.3 284,287 - betA NOLOHH_01900 0.74 -0.9 284,287 - betA NOLOHH_01900 0.74 +0.1 284,287 - betA NOLOHH_01900 0.74 -0.0 284,287 - betA NOLOHH_01900 0.74 -0.4 284,287 - betA NOLOHH_01900 0.74 -1.4 284,568 - -1.3 284,579 + -1.0 284,579 + -0.1 284,609 + -0.0 284,609 + +0.5 284,610 - +1.1 284,610 - +0.8 284,610 - +0.6 284,677 - +0.3 284,732 + +0.3 284,760 + -0.4 284,789 + +0.2 284,790 - +0.5 284,791 + +0.4 284,791 + +0.7 284,794 - +0.5 284,927 - -0.6 285,231 + NOLOHH_01905 0.45 +1.1 285,285 + NOLOHH_01905 0.53 -1.6 285,329 + NOLOHH_01905 0.60 +0.3 285,629 + +0.2 285,697 + +0.5 285,801 + +0.9 285,833 + -0.2 285,834 - -0.1 285,864 - -0.0 285,945 + lutC NOLOHH_01910 0.15 +0.9 286,023 + lutC NOLOHH_01910 0.26 -0.3 286,024 - lutC NOLOHH_01910 0.26 +0.4 286,033 - lutC NOLOHH_01910 0.28 +0.1 286,033 - lutC NOLOHH_01910 0.28 +0.3 286,124 - lutC NOLOHH_01910 0.41 -0.4 286,139 + lutC NOLOHH_01910 0.43 -0.8 286,140 - lutC NOLOHH_01910 0.43 +0.2 286,140 - lutC NOLOHH_01910 0.43 +0.2 286,155 + lutC NOLOHH_01910 0.45 +0.7 286,303 - lutC NOLOHH_01910 0.66 +0.2 286,313 - lutC NOLOHH_01910 0.68 +0.7 286,365 + lutC NOLOHH_01910 0.75 -0.1 286,366 - lutC NOLOHH_01910 0.75 +0.1 286,366 - lutC NOLOHH_01910 0.75 -0.3 286,366 - lutC NOLOHH_01910 0.75 -1.6 286,366 - lutC NOLOHH_01910 0.75 -1.4 286,413 + lutC NOLOHH_01910 0.82 -0.3 286,439 + lutC NOLOHH_01910 0.86 -1.8 286,440 - lutC NOLOHH_01910 0.86 +0.1 286,440 - lutC NOLOHH_01910 0.86 +0.7 286,440 - lutC NOLOHH_01910 0.86 -0.2 286,440 - lutC NOLOHH_01910 0.86 +0.5 286,440 - lutC NOLOHH_01910 0.86 +0.3 286,565 - +0.3 286,574 - +0.2
Or see this region's nucleotide sequence