Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS03050

Experiment: L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABI39_RS03040 and ABI39_RS03045 are separated by 25 nucleotidesABI39_RS03045 and ABI39_RS03050 are separated by 115 nucleotidesABI39_RS03050 and ABI39_RS03055 are separated by 704 nucleotides ABI39_RS03040: ABI39_RS03040 - lytic transglycosylase domain-containing protein, at 887,466 to 888,464 _RS03040 ABI39_RS03045: ABI39_RS03045 - ion transporter, at 888,490 to 889,347 _RS03045 ABI39_RS03050: ABI39_RS03050 - DUF4981 domain-containing protein, at 889,463 to 892,558 _RS03050 ABI39_RS03055: ABI39_RS03055 - hypothetical protein, at 893,263 to 893,889 _RS03055 Position (kb) 889 890 891 892 893Strain fitness (log2 ratio) -2 -1 0 1at 888.519 kb on + strandat 888.604 kb on - strand, within ABI39_RS03045at 888.699 kb on + strand, within ABI39_RS03045at 888.751 kb on - strand, within ABI39_RS03045at 888.800 kb on + strand, within ABI39_RS03045at 888.835 kb on + strand, within ABI39_RS03045at 889.005 kb on - strand, within ABI39_RS03045at 889.013 kb on - strand, within ABI39_RS03045at 889.034 kb on - strand, within ABI39_RS03045at 889.125 kb on - strand, within ABI39_RS03045at 889.209 kb on + strand, within ABI39_RS03045at 889.277 kb on - strandat 889.329 kb on + strandat 889.330 kb on - strandat 889.330 kb on - strandat 889.382 kb on + strandat 889.456 kb on + strandat 889.457 kb on - strandat 889.507 kb on + strandat 889.795 kb on + strand, within ABI39_RS03050at 889.809 kb on + strand, within ABI39_RS03050at 889.814 kb on + strand, within ABI39_RS03050at 889.928 kb on - strand, within ABI39_RS03050at 889.964 kb on + strand, within ABI39_RS03050at 889.965 kb on - strand, within ABI39_RS03050at 889.986 kb on - strand, within ABI39_RS03050at 890.153 kb on + strand, within ABI39_RS03050at 890.153 kb on + strand, within ABI39_RS03050at 890.353 kb on - strand, within ABI39_RS03050at 890.391 kb on + strand, within ABI39_RS03050at 890.396 kb on - strand, within ABI39_RS03050at 890.485 kb on - strand, within ABI39_RS03050at 890.553 kb on + strand, within ABI39_RS03050at 890.553 kb on + strand, within ABI39_RS03050at 890.553 kb on + strand, within ABI39_RS03050at 890.569 kb on + strand, within ABI39_RS03050at 890.570 kb on - strand, within ABI39_RS03050at 890.575 kb on - strand, within ABI39_RS03050at 890.617 kb on - strand, within ABI39_RS03050at 890.679 kb on - strand, within ABI39_RS03050at 890.754 kb on - strand, within ABI39_RS03050at 890.990 kb on + strand, within ABI39_RS03050at 891.035 kb on + strand, within ABI39_RS03050at 891.179 kb on + strand, within ABI39_RS03050at 891.180 kb on - strand, within ABI39_RS03050at 891.279 kb on - strand, within ABI39_RS03050at 891.290 kb on + strand, within ABI39_RS03050at 891.291 kb on - strand, within ABI39_RS03050at 891.386 kb on + strand, within ABI39_RS03050at 891.387 kb on - strand, within ABI39_RS03050at 891.478 kb on + strand, within ABI39_RS03050at 891.533 kb on + strand, within ABI39_RS03050at 891.534 kb on - strand, within ABI39_RS03050at 891.761 kb on + strand, within ABI39_RS03050at 891.867 kb on - strand, within ABI39_RS03050at 891.981 kb on - strand, within ABI39_RS03050at 891.990 kb on - strand, within ABI39_RS03050at 892.096 kb on + strand, within ABI39_RS03050at 892.096 kb on + strand, within ABI39_RS03050at 892.118 kb on + strand, within ABI39_RS03050at 892.209 kb on - strand, within ABI39_RS03050at 892.214 kb on + strand, within ABI39_RS03050at 892.215 kb on - strand, within ABI39_RS03050at 892.215 kb on - strand, within ABI39_RS03050at 892.215 kb on - strand, within ABI39_RS03050at 892.299 kb on + strandat 892.336 kb on + strandat 892.485 kb on - strandat 892.486 kb on + strandat 892.486 kb on + strandat 892.487 kb on - strandat 892.487 kb on - strandat 892.513 kb on + strandat 892.614 kb on - strandat 892.618 kb on + strandat 892.636 kb on + strandat 892.636 kb on + strandat 892.674 kb on - strandat 892.986 kb on + strandat 892.996 kb on + strandat 892.997 kb on - strandat 893.022 kb on + strandat 893.157 kb on + strandat 893.358 kb on - strand, within ABI39_RS03055

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
remove
888,519 + -0.2
888,604 - ABI39_RS03045 0.13 -0.9
888,699 + ABI39_RS03045 0.24 -0.8
888,751 - ABI39_RS03045 0.30 -0.7
888,800 + ABI39_RS03045 0.36 -1.0
888,835 + ABI39_RS03045 0.40 +1.1
889,005 - ABI39_RS03045 0.60 -0.2
889,013 - ABI39_RS03045 0.61 +0.1
889,034 - ABI39_RS03045 0.63 -0.7
889,125 - ABI39_RS03045 0.74 +1.1
889,209 + ABI39_RS03045 0.84 +0.1
889,277 - -0.7
889,329 + +0.5
889,330 - +0.9
889,330 - -0.0
889,382 + -0.8
889,456 + -0.7
889,457 - -0.4
889,507 + +0.5
889,795 + ABI39_RS03050 0.11 +0.0
889,809 + ABI39_RS03050 0.11 +0.2
889,814 + ABI39_RS03050 0.11 -0.5
889,928 - ABI39_RS03050 0.15 +0.1
889,964 + ABI39_RS03050 0.16 -0.3
889,965 - ABI39_RS03050 0.16 +1.0
889,986 - ABI39_RS03050 0.17 -0.9
890,153 + ABI39_RS03050 0.22 -2.3
890,153 + ABI39_RS03050 0.22 +0.0
890,353 - ABI39_RS03050 0.29 -0.2
890,391 + ABI39_RS03050 0.30 -0.5
890,396 - ABI39_RS03050 0.30 -0.7
890,485 - ABI39_RS03050 0.33 +0.9
890,553 + ABI39_RS03050 0.35 -0.7
890,553 + ABI39_RS03050 0.35 -0.1
890,553 + ABI39_RS03050 0.35 +0.3
890,569 + ABI39_RS03050 0.36 -1.1
890,570 - ABI39_RS03050 0.36 -1.6
890,575 - ABI39_RS03050 0.36 +1.6
890,617 - ABI39_RS03050 0.37 -0.9
890,679 - ABI39_RS03050 0.39 +0.6
890,754 - ABI39_RS03050 0.42 +0.7
890,990 + ABI39_RS03050 0.49 -0.0
891,035 + ABI39_RS03050 0.51 +0.3
891,179 + ABI39_RS03050 0.55 -0.1
891,180 - ABI39_RS03050 0.55 -0.1
891,279 - ABI39_RS03050 0.59 +0.7
891,290 + ABI39_RS03050 0.59 +0.3
891,291 - ABI39_RS03050 0.59 -0.3
891,386 + ABI39_RS03050 0.62 -1.6
891,387 - ABI39_RS03050 0.62 -0.5
891,478 + ABI39_RS03050 0.65 -0.8
891,533 + ABI39_RS03050 0.67 +0.3
891,534 - ABI39_RS03050 0.67 +0.4
891,761 + ABI39_RS03050 0.74 +0.1
891,867 - ABI39_RS03050 0.78 +0.7
891,981 - ABI39_RS03050 0.81 +0.2
891,990 - ABI39_RS03050 0.82 -0.2
892,096 + ABI39_RS03050 0.85 +0.2
892,096 + ABI39_RS03050 0.85 -2.0
892,118 + ABI39_RS03050 0.86 -1.0
892,209 - ABI39_RS03050 0.89 -0.1
892,214 + ABI39_RS03050 0.89 -0.8
892,215 - ABI39_RS03050 0.89 -0.6
892,215 - ABI39_RS03050 0.89 +0.1
892,215 - ABI39_RS03050 0.89 -0.7
892,299 + -0.9
892,336 + -0.3
892,485 - +0.1
892,486 + +0.1
892,486 + -0.1
892,487 - +0.5
892,487 - +0.2
892,513 + -0.6
892,614 - -0.3
892,618 + +0.4
892,636 + -0.2
892,636 + -1.0
892,674 - -0.1
892,986 + -0.6
892,996 + -0.1
892,997 - -0.7
893,022 + -0.1
893,157 + +0.5
893,358 - ABI39_RS03055 0.15 +1.4

Or see this region's nucleotide sequence