Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS02020

Experiment: L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS02015 and ABI39_RS02020 are separated by 19 nucleotidesABI39_RS02020 and ABI39_RS02025 are separated by 28 nucleotides ABI39_RS02015: ABI39_RS02015 - RagB/SusD family nutrient uptake outer membrane protein, at 591,778 to 593,475 _RS02015 ABI39_RS02020: ABI39_RS02020 - TonB-dependent receptor, at 593,495 to 596,764 _RS02020 ABI39_RS02025: ABI39_RS02025 - FecR domain-containing protein, at 596,793 to 597,779 _RS02025 Position (kb) 593 594 595 596 597Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 592.523 kb on - strand, within ABI39_RS02015at 592.554 kb on - strand, within ABI39_RS02015at 592.655 kb on + strand, within ABI39_RS02015at 592.672 kb on - strand, within ABI39_RS02015at 592.768 kb on - strand, within ABI39_RS02015at 593.047 kb on + strand, within ABI39_RS02015at 593.118 kb on - strand, within ABI39_RS02015at 593.131 kb on - strand, within ABI39_RS02015at 593.162 kb on + strand, within ABI39_RS02015at 593.162 kb on + strand, within ABI39_RS02015at 593.253 kb on + strand, within ABI39_RS02015at 593.254 kb on - strand, within ABI39_RS02015at 593.356 kb on - strandat 593.454 kb on - strandat 593.455 kb on + strandat 593.455 kb on + strandat 593.456 kb on - strandat 593.456 kb on - strandat 593.456 kb on - strandat 593.519 kb on + strandat 593.617 kb on - strandat 593.668 kb on + strandat 593.855 kb on - strand, within ABI39_RS02020at 593.856 kb on + strand, within ABI39_RS02020at 593.897 kb on + strand, within ABI39_RS02020at 593.919 kb on + strand, within ABI39_RS02020at 593.967 kb on + strand, within ABI39_RS02020at 594.026 kb on - strand, within ABI39_RS02020at 594.320 kb on - strand, within ABI39_RS02020at 594.377 kb on - strand, within ABI39_RS02020at 594.377 kb on - strand, within ABI39_RS02020at 594.426 kb on + strand, within ABI39_RS02020at 594.758 kb on - strand, within ABI39_RS02020at 594.806 kb on + strand, within ABI39_RS02020at 594.850 kb on + strand, within ABI39_RS02020at 594.859 kb on - strand, within ABI39_RS02020at 594.859 kb on - strand, within ABI39_RS02020at 594.860 kb on + strand, within ABI39_RS02020at 594.860 kb on + strand, within ABI39_RS02020at 594.860 kb on + strand, within ABI39_RS02020at 594.861 kb on - strand, within ABI39_RS02020at 594.861 kb on - strand, within ABI39_RS02020at 594.861 kb on - strand, within ABI39_RS02020at 594.883 kb on - strand, within ABI39_RS02020at 594.886 kb on + strand, within ABI39_RS02020at 594.964 kb on - strand, within ABI39_RS02020at 595.054 kb on + strand, within ABI39_RS02020at 595.175 kb on - strand, within ABI39_RS02020at 595.228 kb on + strand, within ABI39_RS02020at 595.272 kb on + strand, within ABI39_RS02020at 595.286 kb on - strand, within ABI39_RS02020at 595.341 kb on + strand, within ABI39_RS02020at 595.341 kb on + strand, within ABI39_RS02020at 595.341 kb on + strand, within ABI39_RS02020at 595.342 kb on - strand, within ABI39_RS02020at 595.348 kb on - strand, within ABI39_RS02020at 595.348 kb on - strand, within ABI39_RS02020at 595.351 kb on + strand, within ABI39_RS02020at 595.352 kb on - strand, within ABI39_RS02020at 595.365 kb on - strand, within ABI39_RS02020at 595.423 kb on - strand, within ABI39_RS02020at 595.471 kb on + strand, within ABI39_RS02020at 595.707 kb on - strand, within ABI39_RS02020at 595.780 kb on + strand, within ABI39_RS02020at 595.813 kb on + strand, within ABI39_RS02020at 595.854 kb on - strand, within ABI39_RS02020at 595.854 kb on - strand, within ABI39_RS02020at 595.875 kb on - strand, within ABI39_RS02020at 595.993 kb on + strand, within ABI39_RS02020at 596.021 kb on + strand, within ABI39_RS02020at 596.021 kb on + strand, within ABI39_RS02020at 596.060 kb on - strand, within ABI39_RS02020at 596.124 kb on - strand, within ABI39_RS02020at 596.129 kb on + strand, within ABI39_RS02020at 596.198 kb on + strand, within ABI39_RS02020at 596.199 kb on - strand, within ABI39_RS02020at 596.215 kb on - strand, within ABI39_RS02020at 596.267 kb on - strand, within ABI39_RS02020at 596.290 kb on + strand, within ABI39_RS02020at 596.291 kb on - strand, within ABI39_RS02020at 596.303 kb on - strand, within ABI39_RS02020at 596.319 kb on - strand, within ABI39_RS02020at 596.345 kb on - strand, within ABI39_RS02020at 596.411 kb on + strand, within ABI39_RS02020at 596.539 kb on - strandat 596.794 kb on + strandat 596.794 kb on + strandat 596.795 kb on - strandat 596.808 kb on - strandat 596.883 kb on - strandat 596.886 kb on - strandat 596.937 kb on + strand, within ABI39_RS02025at 596.938 kb on - strand, within ABI39_RS02025at 596.950 kb on + strand, within ABI39_RS02025at 597.001 kb on + strand, within ABI39_RS02025at 597.002 kb on - strand, within ABI39_RS02025at 597.027 kb on - strand, within ABI39_RS02025at 597.074 kb on + strand, within ABI39_RS02025at 597.151 kb on - strand, within ABI39_RS02025at 597.173 kb on + strand, within ABI39_RS02025at 597.201 kb on - strand, within ABI39_RS02025at 597.277 kb on + strand, within ABI39_RS02025at 597.278 kb on - strand, within ABI39_RS02025at 597.398 kb on + strand, within ABI39_RS02025at 597.398 kb on + strand, within ABI39_RS02025at 597.398 kb on + strand, within ABI39_RS02025at 597.462 kb on + strand, within ABI39_RS02025

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
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592,523 - ABI39_RS02015 0.44 -0.1
592,554 - ABI39_RS02015 0.46 -0.2
592,655 + ABI39_RS02015 0.52 +0.0
592,672 - ABI39_RS02015 0.53 +0.5
592,768 - ABI39_RS02015 0.58 +0.5
593,047 + ABI39_RS02015 0.75 -0.7
593,118 - ABI39_RS02015 0.79 +0.4
593,131 - ABI39_RS02015 0.80 -1.5
593,162 + ABI39_RS02015 0.82 +0.6
593,162 + ABI39_RS02015 0.82 -1.1
593,253 + ABI39_RS02015 0.87 -0.5
593,254 - ABI39_RS02015 0.87 -0.8
593,356 - +0.3
593,454 - +0.6
593,455 + -0.5
593,455 + -0.1
593,456 - +0.7
593,456 - +1.0
593,456 - -0.4
593,519 + +0.4
593,617 - +1.0
593,668 + -1.6
593,855 - ABI39_RS02020 0.11 +1.0
593,856 + ABI39_RS02020 0.11 -4.0
593,897 + ABI39_RS02020 0.12 -1.5
593,919 + ABI39_RS02020 0.13 +0.4
593,967 + ABI39_RS02020 0.14 -0.5
594,026 - ABI39_RS02020 0.16 +1.2
594,320 - ABI39_RS02020 0.25 +3.5
594,377 - ABI39_RS02020 0.27 +0.4
594,377 - ABI39_RS02020 0.27 -1.2
594,426 + ABI39_RS02020 0.28 -0.3
594,758 - ABI39_RS02020 0.39 -2.3
594,806 + ABI39_RS02020 0.40 +0.7
594,850 + ABI39_RS02020 0.41 +0.0
594,859 - ABI39_RS02020 0.42 -1.4
594,859 - ABI39_RS02020 0.42 -0.5
594,860 + ABI39_RS02020 0.42 -0.3
594,860 + ABI39_RS02020 0.42 +1.2
594,860 + ABI39_RS02020 0.42 +0.3
594,861 - ABI39_RS02020 0.42 +1.5
594,861 - ABI39_RS02020 0.42 +1.9
594,861 - ABI39_RS02020 0.42 +0.5
594,883 - ABI39_RS02020 0.42 +0.5
594,886 + ABI39_RS02020 0.43 +0.1
594,964 - ABI39_RS02020 0.45 -0.1
595,054 + ABI39_RS02020 0.48 +0.2
595,175 - ABI39_RS02020 0.51 +0.5
595,228 + ABI39_RS02020 0.53 +1.2
595,272 + ABI39_RS02020 0.54 -1.6
595,286 - ABI39_RS02020 0.55 +0.7
595,341 + ABI39_RS02020 0.56 -1.5
595,341 + ABI39_RS02020 0.56 +1.2
595,341 + ABI39_RS02020 0.56 +1.4
595,342 - ABI39_RS02020 0.56 +1.2
595,348 - ABI39_RS02020 0.57 +1.6
595,348 - ABI39_RS02020 0.57 -0.2
595,351 + ABI39_RS02020 0.57 -2.5
595,352 - ABI39_RS02020 0.57 -0.1
595,365 - ABI39_RS02020 0.57 +1.4
595,423 - ABI39_RS02020 0.59 +0.9
595,471 + ABI39_RS02020 0.60 +0.9
595,707 - ABI39_RS02020 0.68 -0.3
595,780 + ABI39_RS02020 0.70 -0.4
595,813 + ABI39_RS02020 0.71 -1.0
595,854 - ABI39_RS02020 0.72 -0.7
595,854 - ABI39_RS02020 0.72 +0.4
595,875 - ABI39_RS02020 0.73 +0.8
595,993 + ABI39_RS02020 0.76 -0.4
596,021 + ABI39_RS02020 0.77 +0.1
596,021 + ABI39_RS02020 0.77 +0.7
596,060 - ABI39_RS02020 0.78 -0.5
596,124 - ABI39_RS02020 0.80 +1.1
596,129 + ABI39_RS02020 0.81 +0.9
596,198 + ABI39_RS02020 0.83 +0.3
596,199 - ABI39_RS02020 0.83 +0.7
596,215 - ABI39_RS02020 0.83 -0.3
596,267 - ABI39_RS02020 0.85 -0.6
596,290 + ABI39_RS02020 0.85 -0.7
596,291 - ABI39_RS02020 0.86 +1.8
596,303 - ABI39_RS02020 0.86 -0.2
596,319 - ABI39_RS02020 0.86 -1.3
596,345 - ABI39_RS02020 0.87 +0.3
596,411 + ABI39_RS02020 0.89 +0.3
596,539 - +1.2
596,794 + +2.5
596,794 + +0.3
596,795 - +0.9
596,808 - +0.5
596,883 - +0.1
596,886 - -0.1
596,937 + ABI39_RS02025 0.15 -1.6
596,938 - ABI39_RS02025 0.15 +0.5
596,950 + ABI39_RS02025 0.16 +0.5
597,001 + ABI39_RS02025 0.21 -0.1
597,002 - ABI39_RS02025 0.21 +0.9
597,027 - ABI39_RS02025 0.24 +1.8
597,074 + ABI39_RS02025 0.28 +1.3
597,151 - ABI39_RS02025 0.36 -1.7
597,173 + ABI39_RS02025 0.39 -0.1
597,201 - ABI39_RS02025 0.41 +0.4
597,277 + ABI39_RS02025 0.49 +0.7
597,278 - ABI39_RS02025 0.49 +0.5
597,398 + ABI39_RS02025 0.61 -0.5
597,398 + ABI39_RS02025 0.61 +0.8
597,398 + ABI39_RS02025 0.61 +0.1
597,462 + ABI39_RS02025 0.68 -0.0

Or see this region's nucleotide sequence