Experiment: L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01615 and ABI39_RS01620 are separated by 31 nucleotides ABI39_RS01620 and ABI39_RS01625 are separated by 20 nucleotides
ABI39_RS01615: ABI39_RS01615 - glycoside hydrolase, at 481,740 to 483,809
_RS01615
ABI39_RS01620: ABI39_RS01620 - RagB/SusD family nutrient uptake outer membrane protein, at 483,841 to 485,376
_RS01620
ABI39_RS01625: ABI39_RS01625 - TonB-dependent receptor, at 485,397 to 488,813
_RS01625
Position (kb) 483
484
485
486 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.992 kb on - strand, within ABI39_RS01615 at 483.094 kb on - strand, within ABI39_RS01615 at 483.509 kb on + strand, within ABI39_RS01615 at 483.510 kb on - strand, within ABI39_RS01615 at 483.658 kb on - strand at 483.787 kb on + strand at 483.789 kb on + strand at 483.790 kb on - strand at 483.790 kb on - strand at 483.790 kb on - strand at 483.790 kb on - strand at 483.851 kb on + strand at 484.127 kb on - strand, within ABI39_RS01620 at 484.228 kb on - strand, within ABI39_RS01620 at 484.248 kb on + strand, within ABI39_RS01620 at 484.257 kb on + strand, within ABI39_RS01620 at 484.259 kb on + strand, within ABI39_RS01620 at 484.259 kb on + strand, within ABI39_RS01620 at 484.268 kb on + strand, within ABI39_RS01620 at 484.269 kb on - strand, within ABI39_RS01620 at 484.495 kb on - strand, within ABI39_RS01620 at 484.504 kb on - strand, within ABI39_RS01620 at 484.505 kb on + strand, within ABI39_RS01620 at 484.512 kb on - strand, within ABI39_RS01620 at 484.686 kb on + strand, within ABI39_RS01620 at 484.688 kb on + strand, within ABI39_RS01620 at 484.688 kb on + strand, within ABI39_RS01620 at 484.688 kb on + strand, within ABI39_RS01620 at 484.716 kb on + strand, within ABI39_RS01620 at 484.855 kb on + strand, within ABI39_RS01620 at 484.872 kb on - strand, within ABI39_RS01620 at 484.920 kb on - strand, within ABI39_RS01620 at 484.990 kb on + strand, within ABI39_RS01620 at 484.991 kb on - strand, within ABI39_RS01620 at 485.039 kb on + strand, within ABI39_RS01620 at 485.047 kb on - strand, within ABI39_RS01620 at 485.101 kb on - strand, within ABI39_RS01620 at 485.218 kb on + strand, within ABI39_RS01620 at 485.238 kb on + strand at 485.353 kb on + strand at 485.353 kb on + strand at 485.411 kb on + strand at 485.652 kb on - strand at 485.658 kb on - strand at 485.672 kb on + strand at 485.768 kb on + strand, within ABI39_RS01625 at 485.790 kb on - strand, within ABI39_RS01625 at 485.792 kb on - strand, within ABI39_RS01625 at 485.796 kb on - strand, within ABI39_RS01625 at 485.796 kb on - strand, within ABI39_RS01625 at 485.849 kb on + strand, within ABI39_RS01625 at 485.852 kb on - strand, within ABI39_RS01625 at 485.931 kb on - strand, within ABI39_RS01625 at 486.016 kb on + strand, within ABI39_RS01625 at 486.108 kb on + strand, within ABI39_RS01625 at 486.112 kb on + strand, within ABI39_RS01625 at 486.113 kb on - strand, within ABI39_RS01625 at 486.117 kb on - strand, within ABI39_RS01625 at 486.179 kb on - strand, within ABI39_RS01625 at 486.232 kb on + strand, within ABI39_RS01625 at 486.350 kb on + strand, within ABI39_RS01625 at 486.351 kb on - strand, within ABI39_RS01625 at 486.353 kb on + strand, within ABI39_RS01625
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen remove 482,992 - ABI39_RS01615 0.60 -0.1 483,094 - ABI39_RS01615 0.65 +1.7 483,509 + ABI39_RS01615 0.85 +0.1 483,510 - ABI39_RS01615 0.86 +0.6 483,658 - +0.0 483,787 + +1.0 483,789 + -0.1 483,790 - -0.6 483,790 - +0.8 483,790 - -0.2 483,790 - +1.4 483,851 + -0.7 484,127 - ABI39_RS01620 0.19 +0.1 484,228 - ABI39_RS01620 0.25 +1.3 484,248 + ABI39_RS01620 0.26 -1.2 484,257 + ABI39_RS01620 0.27 +1.1 484,259 + ABI39_RS01620 0.27 -0.5 484,259 + ABI39_RS01620 0.27 -0.6 484,268 + ABI39_RS01620 0.28 +0.8 484,269 - ABI39_RS01620 0.28 +1.2 484,495 - ABI39_RS01620 0.43 -0.4 484,504 - ABI39_RS01620 0.43 -1.3 484,505 + ABI39_RS01620 0.43 -0.1 484,512 - ABI39_RS01620 0.44 -1.2 484,686 + ABI39_RS01620 0.55 +0.6 484,688 + ABI39_RS01620 0.55 -0.7 484,688 + ABI39_RS01620 0.55 -0.5 484,688 + ABI39_RS01620 0.55 -0.2 484,716 + ABI39_RS01620 0.57 -2.7 484,855 + ABI39_RS01620 0.66 -0.2 484,872 - ABI39_RS01620 0.67 -0.8 484,920 - ABI39_RS01620 0.70 -0.1 484,990 + ABI39_RS01620 0.75 -0.5 484,991 - ABI39_RS01620 0.75 +0.1 485,039 + ABI39_RS01620 0.78 +0.4 485,047 - ABI39_RS01620 0.79 +1.0 485,101 - ABI39_RS01620 0.82 +0.2 485,218 + ABI39_RS01620 0.90 -0.7 485,238 + -0.0 485,353 + -0.9 485,353 + -0.1 485,411 + -1.0 485,652 - -1.8 485,658 - +0.5 485,672 + -0.6 485,768 + ABI39_RS01625 0.11 +0.5 485,790 - ABI39_RS01625 0.12 -2.0 485,792 - ABI39_RS01625 0.12 +1.3 485,796 - ABI39_RS01625 0.12 +0.7 485,796 - ABI39_RS01625 0.12 -0.3 485,849 + ABI39_RS01625 0.13 +0.6 485,852 - ABI39_RS01625 0.13 +0.5 485,931 - ABI39_RS01625 0.16 +1.8 486,016 + ABI39_RS01625 0.18 +0.1 486,108 + ABI39_RS01625 0.21 +0.3 486,112 + ABI39_RS01625 0.21 -0.7 486,113 - ABI39_RS01625 0.21 -0.5 486,117 - ABI39_RS01625 0.21 +1.1 486,179 - ABI39_RS01625 0.23 +0.1 486,232 + ABI39_RS01625 0.24 +0.4 486,350 + ABI39_RS01625 0.28 +0.1 486,351 - ABI39_RS01625 0.28 +0.7 486,353 + ABI39_RS01625 0.28 +0.3
Or see this region's nucleotide sequence