Experiment: L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01280 and ABI39_RS01285 are separated by 11 nucleotides ABI39_RS01285 and ABI39_RS01290 are separated by 49 nucleotides
ABI39_RS01280: ABI39_RS01280 - efflux transporter outer membrane subunit, at 393,482 to 394,867
_RS01280
ABI39_RS01285: ABI39_RS01285 - efflux RND transporter permease subunit, at 394,879 to 398,097
_RS01285
ABI39_RS01290: ABI39_RS01290 - efflux RND transporter periplasmic adaptor subunit, at 398,147 to 399,358
_RS01290
Position (kb) 394
395
396
397
398
399 Strain fitness (log2 ratio) -1
0
1
2
3 at 393.982 kb on - strand, within ABI39_RS01280 at 394.088 kb on + strand, within ABI39_RS01280 at 394.344 kb on + strand, within ABI39_RS01280 at 394.564 kb on - strand, within ABI39_RS01280 at 394.631 kb on + strand, within ABI39_RS01280 at 394.632 kb on - strand, within ABI39_RS01280 at 394.721 kb on - strand, within ABI39_RS01280 at 394.738 kb on + strand at 394.738 kb on + strand at 394.810 kb on - strand at 394.829 kb on + strand at 394.853 kb on + strand at 394.856 kb on + strand at 394.920 kb on + strand at 395.223 kb on + strand, within ABI39_RS01285 at 395.278 kb on - strand, within ABI39_RS01285 at 395.279 kb on + strand, within ABI39_RS01285 at 395.279 kb on + strand, within ABI39_RS01285 at 395.283 kb on + strand, within ABI39_RS01285 at 395.284 kb on - strand, within ABI39_RS01285 at 395.475 kb on + strand, within ABI39_RS01285 at 395.496 kb on + strand, within ABI39_RS01285 at 395.518 kb on - strand, within ABI39_RS01285 at 395.599 kb on - strand, within ABI39_RS01285 at 395.638 kb on - strand, within ABI39_RS01285 at 395.638 kb on - strand, within ABI39_RS01285 at 395.638 kb on - strand, within ABI39_RS01285 at 395.760 kb on + strand, within ABI39_RS01285 at 395.920 kb on - strand, within ABI39_RS01285 at 395.920 kb on - strand, within ABI39_RS01285 at 395.921 kb on + strand, within ABI39_RS01285 at 395.991 kb on + strand, within ABI39_RS01285 at 396.091 kb on - strand, within ABI39_RS01285 at 396.109 kb on + strand, within ABI39_RS01285 at 396.154 kb on - strand, within ABI39_RS01285 at 396.154 kb on - strand, within ABI39_RS01285 at 396.157 kb on + strand, within ABI39_RS01285 at 396.214 kb on - strand, within ABI39_RS01285 at 396.220 kb on - strand, within ABI39_RS01285 at 396.220 kb on - strand, within ABI39_RS01285 at 396.250 kb on - strand, within ABI39_RS01285 at 396.529 kb on - strand, within ABI39_RS01285 at 396.537 kb on - strand, within ABI39_RS01285 at 396.621 kb on + strand, within ABI39_RS01285 at 396.685 kb on - strand, within ABI39_RS01285 at 396.769 kb on - strand, within ABI39_RS01285 at 396.769 kb on - strand, within ABI39_RS01285 at 396.810 kb on + strand, within ABI39_RS01285 at 396.811 kb on - strand, within ABI39_RS01285 at 396.811 kb on - strand, within ABI39_RS01285 at 396.831 kb on + strand, within ABI39_RS01285 at 396.832 kb on - strand, within ABI39_RS01285 at 397.036 kb on - strand, within ABI39_RS01285 at 397.036 kb on - strand, within ABI39_RS01285 at 397.038 kb on - strand, within ABI39_RS01285 at 397.039 kb on + strand, within ABI39_RS01285 at 397.212 kb on + strand, within ABI39_RS01285 at 397.216 kb on - strand, within ABI39_RS01285 at 397.216 kb on - strand, within ABI39_RS01285 at 397.216 kb on - strand, within ABI39_RS01285 at 397.262 kb on - strand, within ABI39_RS01285 at 397.407 kb on + strand, within ABI39_RS01285 at 397.462 kb on - strand, within ABI39_RS01285 at 397.545 kb on + strand, within ABI39_RS01285 at 397.617 kb on + strand, within ABI39_RS01285 at 397.647 kb on + strand, within ABI39_RS01285 at 397.649 kb on + strand, within ABI39_RS01285 at 397.758 kb on + strand, within ABI39_RS01285 at 397.865 kb on + strand at 397.866 kb on - strand at 397.960 kb on + strand at 398.038 kb on + strand at 398.089 kb on + strand at 398.102 kb on + strand at 398.105 kb on - strand at 398.112 kb on - strand at 398.116 kb on - strand at 398.118 kb on - strand at 398.168 kb on - strand at 398.203 kb on - strand at 398.316 kb on + strand, within ABI39_RS01290 at 398.369 kb on - strand, within ABI39_RS01290 at 398.453 kb on - strand, within ABI39_RS01290 at 398.453 kb on - strand, within ABI39_RS01290 at 398.455 kb on + strand, within ABI39_RS01290 at 398.456 kb on - strand, within ABI39_RS01290 at 398.531 kb on + strand, within ABI39_RS01290 at 398.590 kb on + strand, within ABI39_RS01290 at 398.707 kb on - strand, within ABI39_RS01290 at 398.773 kb on + strand, within ABI39_RS01290 at 398.795 kb on - strand, within ABI39_RS01290 at 398.837 kb on + strand, within ABI39_RS01290 at 398.938 kb on + strand, within ABI39_RS01290 at 399.048 kb on + strand, within ABI39_RS01290 at 399.055 kb on + strand, within ABI39_RS01290
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen remove 393,982 - ABI39_RS01280 0.36 +1.0 394,088 + ABI39_RS01280 0.44 -0.1 394,344 + ABI39_RS01280 0.62 -1.6 394,564 - ABI39_RS01280 0.78 +0.4 394,631 + ABI39_RS01280 0.83 +1.9 394,632 - ABI39_RS01280 0.83 -0.4 394,721 - ABI39_RS01280 0.89 +0.8 394,738 + +2.2 394,738 + +0.7 394,810 - +0.7 394,829 + -0.7 394,853 + +0.9 394,856 + +1.1 394,920 + +1.9 395,223 + ABI39_RS01285 0.11 +2.7 395,278 - ABI39_RS01285 0.12 +1.8 395,279 + ABI39_RS01285 0.12 +0.4 395,279 + ABI39_RS01285 0.12 +1.2 395,283 + ABI39_RS01285 0.13 +3.7 395,284 - ABI39_RS01285 0.13 +0.7 395,475 + ABI39_RS01285 0.19 +1.2 395,496 + ABI39_RS01285 0.19 +2.4 395,518 - ABI39_RS01285 0.20 -0.4 395,599 - ABI39_RS01285 0.22 +1.2 395,638 - ABI39_RS01285 0.24 +0.4 395,638 - ABI39_RS01285 0.24 +0.6 395,638 - ABI39_RS01285 0.24 +0.0 395,760 + ABI39_RS01285 0.27 +1.9 395,920 - ABI39_RS01285 0.32 +0.2 395,920 - ABI39_RS01285 0.32 +2.1 395,921 + ABI39_RS01285 0.32 +3.2 395,991 + ABI39_RS01285 0.35 +1.1 396,091 - ABI39_RS01285 0.38 +0.4 396,109 + ABI39_RS01285 0.38 +2.5 396,154 - ABI39_RS01285 0.40 +1.3 396,154 - ABI39_RS01285 0.40 +2.7 396,157 + ABI39_RS01285 0.40 +3.0 396,214 - ABI39_RS01285 0.41 +0.5 396,220 - ABI39_RS01285 0.42 +0.9 396,220 - ABI39_RS01285 0.42 +0.3 396,250 - ABI39_RS01285 0.43 +1.0 396,529 - ABI39_RS01285 0.51 +1.1 396,537 - ABI39_RS01285 0.52 +0.4 396,621 + ABI39_RS01285 0.54 +0.9 396,685 - ABI39_RS01285 0.56 +0.7 396,769 - ABI39_RS01285 0.59 +0.5 396,769 - ABI39_RS01285 0.59 +1.9 396,810 + ABI39_RS01285 0.60 -0.1 396,811 - ABI39_RS01285 0.60 +1.1 396,811 - ABI39_RS01285 0.60 +0.5 396,831 + ABI39_RS01285 0.61 +1.9 396,832 - ABI39_RS01285 0.61 +0.6 397,036 - ABI39_RS01285 0.67 -0.2 397,036 - ABI39_RS01285 0.67 +1.3 397,038 - ABI39_RS01285 0.67 +0.3 397,039 + ABI39_RS01285 0.67 +0.4 397,212 + ABI39_RS01285 0.72 +0.3 397,216 - ABI39_RS01285 0.73 +1.2 397,216 - ABI39_RS01285 0.73 +1.5 397,216 - ABI39_RS01285 0.73 +0.6 397,262 - ABI39_RS01285 0.74 -0.4 397,407 + ABI39_RS01285 0.79 +0.2 397,462 - ABI39_RS01285 0.80 +1.3 397,545 + ABI39_RS01285 0.83 +2.5 397,617 + ABI39_RS01285 0.85 +2.2 397,647 + ABI39_RS01285 0.86 +1.6 397,649 + ABI39_RS01285 0.86 +1.3 397,758 + ABI39_RS01285 0.89 +0.7 397,865 + -0.0 397,866 - +1.0 397,960 + +1.2 398,038 + -0.3 398,089 + +1.3 398,102 + +1.1 398,105 - -0.6 398,112 - +1.6 398,116 - +1.2 398,118 - +0.3 398,168 - +0.6 398,203 - +0.0 398,316 + ABI39_RS01290 0.14 +2.3 398,369 - ABI39_RS01290 0.18 -0.7 398,453 - ABI39_RS01290 0.25 +1.5 398,453 - ABI39_RS01290 0.25 -0.3 398,455 + ABI39_RS01290 0.25 +0.7 398,456 - ABI39_RS01290 0.25 +0.1 398,531 + ABI39_RS01290 0.32 +1.9 398,590 + ABI39_RS01290 0.37 +1.6 398,707 - ABI39_RS01290 0.46 +0.9 398,773 + ABI39_RS01290 0.52 -0.1 398,795 - ABI39_RS01290 0.53 +1.0 398,837 + ABI39_RS01290 0.57 +1.5 398,938 + ABI39_RS01290 0.65 -0.3 399,048 + ABI39_RS01290 0.74 +1.9 399,055 + ABI39_RS01290 0.75 +1.0
Or see this region's nucleotide sequence