Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03190 and ABI39_RS03195 are separated by 1 nucleotides ABI39_RS03195 and ABI39_RS03200 are separated by 13 nucleotides ABI39_RS03200 and ABI39_RS03205 are separated by 221 nucleotides
ABI39_RS03190: ABI39_RS03190 - DUF4433 domain-containing protein, at 922,315 to 926,799
_RS03190
ABI39_RS03195: ABI39_RS03195 - S1 RNA-binding domain-containing protein, at 926,801 to 931,000
_RS03195
ABI39_RS03200: ABI39_RS03200 - helix-turn-helix transcriptional regulator, at 931,014 to 931,226
_RS03200
ABI39_RS03205: ABI39_RS03205 - site-specific integrase, at 931,448 to 932,458
_RS03205
Position (kb) 926
927
928
929
930
931
932 Strain fitness (log2 ratio) -1
0
1 at 925.997 kb on + strand, within ABI39_RS03190 at 926.000 kb on + strand, within ABI39_RS03190 at 926.019 kb on + strand, within ABI39_RS03190 at 926.156 kb on - strand, within ABI39_RS03190 at 926.538 kb on + strand at 926.563 kb on - strand at 926.584 kb on + strand at 926.665 kb on + strand at 926.665 kb on + strand at 926.665 kb on + strand at 926.697 kb on - strand at 926.815 kb on + strand at 926.832 kb on + strand at 926.833 kb on - strand at 926.842 kb on - strand at 926.905 kb on - strand at 927.014 kb on + strand at 927.296 kb on - strand, within ABI39_RS03195 at 927.300 kb on + strand, within ABI39_RS03195 at 927.301 kb on - strand, within ABI39_RS03195 at 927.473 kb on + strand, within ABI39_RS03195 at 927.603 kb on - strand, within ABI39_RS03195 at 927.844 kb on + strand, within ABI39_RS03195 at 927.845 kb on - strand, within ABI39_RS03195 at 927.849 kb on - strand, within ABI39_RS03195 at 927.980 kb on - strand, within ABI39_RS03195 at 928.185 kb on + strand, within ABI39_RS03195 at 928.248 kb on - strand, within ABI39_RS03195 at 928.356 kb on + strand, within ABI39_RS03195 at 928.363 kb on + strand, within ABI39_RS03195 at 928.466 kb on + strand, within ABI39_RS03195 at 928.568 kb on + strand, within ABI39_RS03195 at 928.569 kb on - strand, within ABI39_RS03195 at 928.626 kb on + strand, within ABI39_RS03195 at 928.627 kb on - strand, within ABI39_RS03195 at 928.765 kb on - strand, within ABI39_RS03195 at 928.772 kb on + strand, within ABI39_RS03195 at 928.773 kb on - strand, within ABI39_RS03195 at 928.782 kb on - strand, within ABI39_RS03195 at 928.910 kb on + strand, within ABI39_RS03195 at 928.911 kb on - strand, within ABI39_RS03195 at 929.098 kb on + strand, within ABI39_RS03195 at 929.105 kb on - strand, within ABI39_RS03195 at 929.150 kb on + strand, within ABI39_RS03195 at 929.245 kb on - strand, within ABI39_RS03195 at 929.308 kb on + strand, within ABI39_RS03195 at 929.312 kb on + strand, within ABI39_RS03195 at 929.522 kb on - strand, within ABI39_RS03195 at 929.556 kb on - strand, within ABI39_RS03195 at 929.755 kb on - strand, within ABI39_RS03195 at 930.369 kb on - strand, within ABI39_RS03195 at 930.402 kb on + strand, within ABI39_RS03195 at 930.402 kb on + strand, within ABI39_RS03195 at 930.406 kb on + strand, within ABI39_RS03195 at 930.406 kb on + strand, within ABI39_RS03195 at 930.407 kb on - strand, within ABI39_RS03195 at 930.407 kb on - strand, within ABI39_RS03195 at 930.524 kb on + strand, within ABI39_RS03195 at 930.525 kb on - strand, within ABI39_RS03195 at 930.564 kb on - strand, within ABI39_RS03195 at 930.640 kb on - strand at 930.652 kb on - strand at 930.659 kb on + strand at 930.661 kb on + strand at 930.828 kb on - strand at 930.950 kb on + strand at 930.975 kb on - strand at 930.978 kb on - strand at 930.986 kb on + strand at 931.001 kb on - strand at 931.010 kb on + strand at 931.023 kb on - strand at 931.025 kb on - strand at 931.125 kb on - strand, within ABI39_RS03200 at 931.192 kb on - strand, within ABI39_RS03200 at 931.192 kb on - strand, within ABI39_RS03200 at 931.300 kb on - strand at 931.302 kb on + strand at 931.302 kb on + strand at 931.303 kb on - strand at 931.303 kb on - strand at 931.305 kb on + strand at 931.307 kb on + strand at 931.416 kb on + strand at 931.434 kb on + strand at 931.523 kb on + strand at 931.523 kb on + strand at 931.690 kb on + strand, within ABI39_RS03205 at 931.696 kb on + strand, within ABI39_RS03205 at 931.932 kb on + strand, within ABI39_RS03205 at 931.937 kb on + strand, within ABI39_RS03205 at 931.961 kb on - strand, within ABI39_RS03205 at 931.961 kb on - strand, within ABI39_RS03205 at 931.966 kb on - strand, within ABI39_RS03205
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen remove 925,997 + ABI39_RS03190 0.82 -0.1 926,000 + ABI39_RS03190 0.82 +0.3 926,019 + ABI39_RS03190 0.83 -0.2 926,156 - ABI39_RS03190 0.86 -0.1 926,538 + -0.0 926,563 - -0.0 926,584 + +0.2 926,665 + -0.2 926,665 + -0.5 926,665 + +0.4 926,697 - -0.6 926,815 + +0.3 926,832 + -0.5 926,833 - +0.6 926,842 - -0.2 926,905 - -0.1 927,014 + -0.4 927,296 - ABI39_RS03195 0.12 -0.0 927,300 + ABI39_RS03195 0.12 -0.6 927,301 - ABI39_RS03195 0.12 -0.5 927,473 + ABI39_RS03195 0.16 +0.4 927,603 - ABI39_RS03195 0.19 -1.4 927,844 + ABI39_RS03195 0.25 -0.4 927,845 - ABI39_RS03195 0.25 -0.1 927,849 - ABI39_RS03195 0.25 -0.7 927,980 - ABI39_RS03195 0.28 -0.1 928,185 + ABI39_RS03195 0.33 -0.4 928,248 - ABI39_RS03195 0.34 -0.5 928,356 + ABI39_RS03195 0.37 -0.2 928,363 + ABI39_RS03195 0.37 -0.7 928,466 + ABI39_RS03195 0.40 -0.5 928,568 + ABI39_RS03195 0.42 -0.6 928,569 - ABI39_RS03195 0.42 -0.6 928,626 + ABI39_RS03195 0.43 -0.5 928,627 - ABI39_RS03195 0.43 -0.3 928,765 - ABI39_RS03195 0.47 -0.2 928,772 + ABI39_RS03195 0.47 -0.4 928,773 - ABI39_RS03195 0.47 -0.4 928,782 - ABI39_RS03195 0.47 -0.6 928,910 + ABI39_RS03195 0.50 -0.4 928,911 - ABI39_RS03195 0.50 -0.1 929,098 + ABI39_RS03195 0.55 -0.7 929,105 - ABI39_RS03195 0.55 -0.5 929,150 + ABI39_RS03195 0.56 -0.2 929,245 - ABI39_RS03195 0.58 -0.4 929,308 + ABI39_RS03195 0.60 -0.5 929,312 + ABI39_RS03195 0.60 -0.2 929,522 - ABI39_RS03195 0.65 -0.4 929,556 - ABI39_RS03195 0.66 -1.3 929,755 - ABI39_RS03195 0.70 -0.8 930,369 - ABI39_RS03195 0.85 +0.1 930,402 + ABI39_RS03195 0.86 -0.9 930,402 + ABI39_RS03195 0.86 -0.3 930,406 + ABI39_RS03195 0.86 -0.1 930,406 + ABI39_RS03195 0.86 -0.5 930,407 - ABI39_RS03195 0.86 +0.0 930,407 - ABI39_RS03195 0.86 +0.1 930,524 + ABI39_RS03195 0.89 +0.9 930,525 - ABI39_RS03195 0.89 -0.3 930,564 - ABI39_RS03195 0.90 +0.1 930,640 - -0.0 930,652 - -0.6 930,659 + -0.3 930,661 + -0.3 930,828 - +0.3 930,950 + -0.0 930,975 - -0.9 930,978 - -0.2 930,986 + -0.8 931,001 - -0.2 931,010 + -0.9 931,023 - -0.4 931,025 - -0.5 931,125 - ABI39_RS03200 0.52 +0.3 931,192 - ABI39_RS03200 0.84 +0.4 931,192 - ABI39_RS03200 0.84 +0.0 931,300 - +0.8 931,302 + -0.4 931,302 + -0.2 931,303 - +0.5 931,303 - +0.4 931,305 + -0.3 931,307 + -0.1 931,416 + +0.1 931,434 + +0.1 931,523 + +0.3 931,523 + +0.3 931,690 + ABI39_RS03205 0.24 +0.1 931,696 + ABI39_RS03205 0.25 +0.1 931,932 + ABI39_RS03205 0.48 -1.0 931,937 + ABI39_RS03205 0.48 -0.5 931,961 - ABI39_RS03205 0.51 -0.3 931,961 - ABI39_RS03205 0.51 -0.0 931,966 - ABI39_RS03205 0.51 -0.1
Or see this region's nucleotide sequence