Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02980 and ABI39_RS02985 are separated by 23 nucleotides ABI39_RS02985 and ABI39_RS02990 are separated by 307 nucleotides ABI39_RS02990 and ABI39_RS02995 are separated by 39 nucleotides
ABI39_RS02980: ABI39_RS02980 - N-acetyltransferase, at 868,600 to 869,157
_RS02980
ABI39_RS02985: ABI39_RS02985 - arginine repressor, at 869,181 to 869,657
_RS02985
ABI39_RS02990: ABI39_RS02990 - rhamnulokinase, at 869,965 to 871,443
_RS02990
ABI39_RS02995: ABI39_RS02995 - L-rhamnose isomerase, at 871,483 to 872,739
_RS02995
Position (kb) 869
870
871
872 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 869.027 kb on + strand, within ABI39_RS02980 at 869.079 kb on + strand, within ABI39_RS02980 at 869.082 kb on + strand, within ABI39_RS02980 at 869.175 kb on - strand at 869.177 kb on + strand at 869.179 kb on + strand at 869.188 kb on - strand at 869.258 kb on + strand, within ABI39_RS02985 at 869.262 kb on - strand, within ABI39_RS02985 at 869.264 kb on + strand, within ABI39_RS02985 at 869.280 kb on - strand, within ABI39_RS02985 at 869.315 kb on + strand, within ABI39_RS02985 at 869.316 kb on - strand, within ABI39_RS02985 at 869.334 kb on - strand, within ABI39_RS02985 at 869.334 kb on - strand, within ABI39_RS02985 at 869.466 kb on + strand, within ABI39_RS02985 at 869.467 kb on - strand, within ABI39_RS02985 at 869.471 kb on - strand, within ABI39_RS02985 at 869.471 kb on - strand, within ABI39_RS02985 at 869.471 kb on - strand, within ABI39_RS02985 at 869.472 kb on + strand, within ABI39_RS02985 at 869.619 kb on - strand at 869.690 kb on + strand at 869.770 kb on - strand at 869.778 kb on - strand at 869.783 kb on + strand at 869.839 kb on - strand at 869.860 kb on + strand at 869.882 kb on - strand at 869.882 kb on - strand at 870.023 kb on + strand at 870.081 kb on + strand at 870.119 kb on - strand, within ABI39_RS02990 at 870.128 kb on - strand, within ABI39_RS02990 at 870.138 kb on + strand, within ABI39_RS02990 at 870.282 kb on - strand, within ABI39_RS02990 at 870.298 kb on + strand, within ABI39_RS02990 at 870.328 kb on + strand, within ABI39_RS02990 at 870.377 kb on + strand, within ABI39_RS02990 at 870.423 kb on + strand, within ABI39_RS02990 at 870.436 kb on - strand, within ABI39_RS02990 at 870.449 kb on + strand, within ABI39_RS02990 at 870.450 kb on - strand, within ABI39_RS02990 at 870.784 kb on - strand, within ABI39_RS02990 at 870.787 kb on - strand, within ABI39_RS02990 at 870.788 kb on + strand, within ABI39_RS02990 at 870.788 kb on + strand, within ABI39_RS02990 at 870.861 kb on + strand, within ABI39_RS02990 at 870.920 kb on - strand, within ABI39_RS02990 at 870.938 kb on + strand, within ABI39_RS02990 at 871.127 kb on + strand, within ABI39_RS02990 at 871.246 kb on - strand, within ABI39_RS02990 at 871.247 kb on + strand, within ABI39_RS02990 at 871.437 kb on + strand at 871.445 kb on - strand at 871.471 kb on + strand at 871.506 kb on + strand at 871.506 kb on + strand at 871.681 kb on + strand, within ABI39_RS02995 at 871.742 kb on - strand, within ABI39_RS02995 at 871.975 kb on - strand, within ABI39_RS02995 at 872.008 kb on - strand, within ABI39_RS02995 at 872.099 kb on + strand, within ABI39_RS02995 at 872.215 kb on + strand, within ABI39_RS02995 at 872.251 kb on - strand, within ABI39_RS02995
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen remove 869,027 + ABI39_RS02980 0.77 -3.2 869,079 + ABI39_RS02980 0.86 -5.0 869,082 + ABI39_RS02980 0.86 -2.8 869,175 - -3.0 869,177 + -4.5 869,179 + -5.5 869,188 - -0.6 869,258 + ABI39_RS02985 0.16 -4.0 869,262 - ABI39_RS02985 0.17 -0.4 869,264 + ABI39_RS02985 0.17 -4.2 869,280 - ABI39_RS02985 0.21 -0.5 869,315 + ABI39_RS02985 0.28 -4.1 869,316 - ABI39_RS02985 0.28 -0.6 869,334 - ABI39_RS02985 0.32 -0.6 869,334 - ABI39_RS02985 0.32 -0.8 869,466 + ABI39_RS02985 0.60 -3.8 869,467 - ABI39_RS02985 0.60 -0.4 869,471 - ABI39_RS02985 0.61 -0.8 869,471 - ABI39_RS02985 0.61 -1.0 869,471 - ABI39_RS02985 0.61 -0.5 869,472 + ABI39_RS02985 0.61 -2.4 869,619 - -0.6 869,690 + -4.3 869,770 - +0.0 869,778 - -0.5 869,783 + -0.0 869,839 - -0.4 869,860 + -0.1 869,882 - -0.4 869,882 - -0.4 870,023 + +0.1 870,081 + +0.1 870,119 - ABI39_RS02990 0.10 +0.2 870,128 - ABI39_RS02990 0.11 +0.7 870,138 + ABI39_RS02990 0.12 -0.5 870,282 - ABI39_RS02990 0.21 +0.1 870,298 + ABI39_RS02990 0.23 -0.6 870,328 + ABI39_RS02990 0.25 -0.6 870,377 + ABI39_RS02990 0.28 +0.1 870,423 + ABI39_RS02990 0.31 -0.6 870,436 - ABI39_RS02990 0.32 +0.1 870,449 + ABI39_RS02990 0.33 -0.1 870,450 - ABI39_RS02990 0.33 -1.4 870,784 - ABI39_RS02990 0.55 +0.2 870,787 - ABI39_RS02990 0.56 -0.0 870,788 + ABI39_RS02990 0.56 +0.2 870,788 + ABI39_RS02990 0.56 +0.3 870,861 + ABI39_RS02990 0.61 -0.3 870,920 - ABI39_RS02990 0.65 -0.5 870,938 + ABI39_RS02990 0.66 +0.2 871,127 + ABI39_RS02990 0.79 -0.5 871,246 - ABI39_RS02990 0.87 +0.7 871,247 + ABI39_RS02990 0.87 +0.4 871,437 + -0.2 871,445 - -0.0 871,471 + -0.1 871,506 + -0.2 871,506 + -0.3 871,681 + ABI39_RS02995 0.16 +0.3 871,742 - ABI39_RS02995 0.21 -0.0 871,975 - ABI39_RS02995 0.39 +0.2 872,008 - ABI39_RS02995 0.42 +0.1 872,099 + ABI39_RS02995 0.49 -0.6 872,215 + ABI39_RS02995 0.58 +0.1 872,251 - ABI39_RS02995 0.61 -0.1
Or see this region's nucleotide sequence