Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse4; day8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04982 and BACOVA_04983 are separated by 15 nucleotides BACOVA_04983 and BACOVA_04984 are separated by 82 nucleotides
BACOVA_04982: BACOVA_04982 - hypothetical protein, at 432,370 to 433,974
_04982
BACOVA_04983: BACOVA_04983 - hypothetical protein, at 433,990 to 435,276
_04983
BACOVA_04984: BACOVA_04984 - hypothetical protein, at 435,359 to 436,132
_04984
Position (kb) 433
434
435
436 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 433.000 kb on + strand, within BACOVA_04982 at 433.000 kb on + strand, within BACOVA_04982 at 433.008 kb on + strand, within BACOVA_04982 at 433.009 kb on - strand, within BACOVA_04982 at 433.038 kb on + strand, within BACOVA_04982 at 433.072 kb on + strand, within BACOVA_04982 at 433.073 kb on - strand, within BACOVA_04982 at 433.094 kb on - strand, within BACOVA_04982 at 433.103 kb on + strand, within BACOVA_04982 at 433.143 kb on + strand, within BACOVA_04982 at 433.144 kb on - strand, within BACOVA_04982 at 433.149 kb on + strand, within BACOVA_04982 at 433.150 kb on - strand, within BACOVA_04982 at 433.222 kb on + strand, within BACOVA_04982 at 433.224 kb on + strand, within BACOVA_04982 at 433.225 kb on - strand, within BACOVA_04982 at 433.258 kb on + strand, within BACOVA_04982 at 433.259 kb on - strand, within BACOVA_04982 at 433.261 kb on + strand, within BACOVA_04982 at 433.264 kb on + strand, within BACOVA_04982 at 433.265 kb on - strand, within BACOVA_04982 at 433.284 kb on - strand, within BACOVA_04982 at 433.284 kb on - strand, within BACOVA_04982 at 433.284 kb on - strand, within BACOVA_04982 at 433.315 kb on - strand, within BACOVA_04982 at 433.367 kb on - strand, within BACOVA_04982 at 433.367 kb on - strand, within BACOVA_04982 at 433.391 kb on - strand, within BACOVA_04982 at 433.392 kb on + strand, within BACOVA_04982 at 433.393 kb on - strand, within BACOVA_04982 at 433.449 kb on + strand, within BACOVA_04982 at 433.450 kb on - strand, within BACOVA_04982 at 433.460 kb on - strand, within BACOVA_04982 at 433.462 kb on - strand, within BACOVA_04982 at 433.500 kb on + strand, within BACOVA_04982 at 433.516 kb on - strand, within BACOVA_04982 at 433.521 kb on + strand, within BACOVA_04982 at 433.521 kb on + strand, within BACOVA_04982 at 433.540 kb on + strand, within BACOVA_04982 at 433.540 kb on + strand, within BACOVA_04982 at 433.545 kb on - strand, within BACOVA_04982 at 433.562 kb on - strand, within BACOVA_04982 at 433.578 kb on + strand, within BACOVA_04982 at 433.611 kb on + strand, within BACOVA_04982 at 433.626 kb on - strand, within BACOVA_04982 at 433.628 kb on + strand, within BACOVA_04982 at 433.696 kb on - strand, within BACOVA_04982 at 433.715 kb on + strand, within BACOVA_04982 at 433.716 kb on - strand, within BACOVA_04982 at 433.716 kb on - strand, within BACOVA_04982 at 433.716 kb on - strand, within BACOVA_04982 at 433.729 kb on + strand, within BACOVA_04982 at 433.729 kb on + strand, within BACOVA_04982 at 433.767 kb on + strand, within BACOVA_04982 at 433.773 kb on + strand, within BACOVA_04982 at 433.800 kb on + strand, within BACOVA_04982 at 433.801 kb on - strand, within BACOVA_04982 at 433.835 kb on + strand at 433.843 kb on - strand at 433.847 kb on - strand at 433.858 kb on - strand at 433.872 kb on + strand at 433.873 kb on - strand at 433.878 kb on + strand at 433.879 kb on - strand at 433.890 kb on + strand at 433.891 kb on - strand at 433.945 kb on + strand at 433.946 kb on - strand at 433.946 kb on - strand at 433.952 kb on - strand at 433.977 kb on + strand at 433.977 kb on + strand at 433.983 kb on + strand at 433.989 kb on + strand at 433.990 kb on - strand at 433.990 kb on - strand at 434.006 kb on + strand at 434.010 kb on - strand at 434.010 kb on - strand at 434.017 kb on - strand at 434.019 kb on + strand at 434.034 kb on - strand at 434.048 kb on + strand at 434.048 kb on + strand at 434.049 kb on - strand at 434.065 kb on + strand at 434.079 kb on + strand at 434.096 kb on + strand at 434.107 kb on + strand at 434.108 kb on - strand at 434.108 kb on - strand at 434.109 kb on + strand at 434.109 kb on + strand at 434.109 kb on + strand at 434.110 kb on - strand at 434.112 kb on + strand at 434.112 kb on + strand at 434.113 kb on - strand at 434.234 kb on - strand, within BACOVA_04983 at 434.235 kb on + strand, within BACOVA_04983 at 434.277 kb on + strand, within BACOVA_04983 at 434.281 kb on - strand, within BACOVA_04983 at 434.427 kb on + strand, within BACOVA_04983 at 434.454 kb on + strand, within BACOVA_04983 at 434.558 kb on - strand, within BACOVA_04983 at 434.618 kb on + strand, within BACOVA_04983 at 434.618 kb on + strand, within BACOVA_04983 at 434.618 kb on + strand, within BACOVA_04983 at 434.619 kb on - strand, within BACOVA_04983 at 434.619 kb on - strand, within BACOVA_04983 at 434.632 kb on + strand, within BACOVA_04983 at 434.658 kb on + strand, within BACOVA_04983 at 434.658 kb on + strand, within BACOVA_04983 at 434.658 kb on + strand, within BACOVA_04983 at 434.659 kb on - strand, within BACOVA_04983 at 434.793 kb on + strand, within BACOVA_04983 at 434.793 kb on + strand, within BACOVA_04983 at 434.895 kb on - strand, within BACOVA_04983 at 434.895 kb on - strand, within BACOVA_04983 at 434.912 kb on - strand, within BACOVA_04983 at 434.952 kb on - strand, within BACOVA_04983 at 434.982 kb on + strand, within BACOVA_04983 at 435.016 kb on - strand, within BACOVA_04983 at 435.045 kb on + strand, within BACOVA_04983 at 435.045 kb on + strand, within BACOVA_04983 at 435.045 kb on + strand, within BACOVA_04983 at 435.046 kb on - strand, within BACOVA_04983 at 435.046 kb on - strand, within BACOVA_04983 at 435.079 kb on - strand, within BACOVA_04983 at 435.093 kb on + strand, within BACOVA_04983 at 435.107 kb on - strand, within BACOVA_04983 at 435.117 kb on + strand, within BACOVA_04983 at 435.123 kb on + strand, within BACOVA_04983 at 435.181 kb on + strand at 435.182 kb on - strand at 435.184 kb on - strand at 435.247 kb on - strand at 435.255 kb on - strand at 435.271 kb on - strand at 435.288 kb on - strand at 435.288 kb on - strand at 435.289 kb on + strand at 435.314 kb on - strand at 435.319 kb on + strand at 435.324 kb on - strand at 435.324 kb on - strand at 435.334 kb on - strand at 435.359 kb on - strand at 435.375 kb on + strand at 435.375 kb on + strand at 435.376 kb on - strand at 435.446 kb on + strand, within BACOVA_04984 at 435.447 kb on - strand, within BACOVA_04984 at 435.448 kb on + strand, within BACOVA_04984 at 435.448 kb on + strand, within BACOVA_04984 at 435.448 kb on + strand, within BACOVA_04984 at 435.507 kb on + strand, within BACOVA_04984 at 435.508 kb on - strand, within BACOVA_04984 at 435.555 kb on + strand, within BACOVA_04984 at 435.593 kb on + strand, within BACOVA_04984 at 435.594 kb on - strand, within BACOVA_04984 at 435.596 kb on - strand, within BACOVA_04984 at 435.660 kb on + strand, within BACOVA_04984 at 435.660 kb on + strand, within BACOVA_04984 at 435.661 kb on - strand, within BACOVA_04984 at 435.662 kb on + strand, within BACOVA_04984 at 435.663 kb on - strand, within BACOVA_04984 at 435.673 kb on - strand, within BACOVA_04984 at 435.689 kb on + strand, within BACOVA_04984 at 435.704 kb on + strand, within BACOVA_04984 at 435.708 kb on - strand, within BACOVA_04984 at 435.760 kb on + strand, within BACOVA_04984 at 435.783 kb on - strand, within BACOVA_04984 at 435.810 kb on + strand, within BACOVA_04984 at 435.811 kb on - strand, within BACOVA_04984 at 435.813 kb on - strand, within BACOVA_04984 at 435.852 kb on + strand, within BACOVA_04984 at 435.888 kb on + strand, within BACOVA_04984 at 435.888 kb on + strand, within BACOVA_04984 at 435.890 kb on + strand, within BACOVA_04984 at 435.890 kb on + strand, within BACOVA_04984 at 435.891 kb on - strand, within BACOVA_04984 at 435.896 kb on + strand, within BACOVA_04984 at 435.901 kb on + strand, within BACOVA_04984 at 435.955 kb on - strand, within BACOVA_04984 at 435.972 kb on + strand, within BACOVA_04984 at 436.002 kb on + strand, within BACOVA_04984 at 436.045 kb on + strand, within BACOVA_04984 at 436.046 kb on - strand, within BACOVA_04984 at 436.133 kb on + strand at 436.138 kb on + strand at 436.138 kb on + strand at 436.140 kb on + strand at 436.140 kb on + strand at 436.143 kb on + strand at 436.143 kb on + strand at 436.144 kb on - strand at 436.148 kb on + strand at 436.152 kb on - strand at 436.180 kb on - strand at 436.210 kb on - strand at 436.215 kb on - strand at 436.217 kb on - strand at 436.217 kb on - strand at 436.219 kb on + strand at 436.219 kb on + strand at 436.220 kb on - strand at 436.220 kb on - strand at 436.256 kb on - strand at 436.258 kb on + strand at 436.259 kb on - strand at 436.267 kb on + strand at 436.267 kb on + strand at 436.268 kb on - strand at 436.274 kb on + strand at 436.274 kb on + strand at 436.275 kb on - strand at 436.275 kb on - strand at 436.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse4; day8 remove 433,000 + BACOVA_04982 0.39 +2.0 433,000 + BACOVA_04982 0.39 +0.5 433,008 + BACOVA_04982 0.40 -1.7 433,009 - BACOVA_04982 0.40 +1.9 433,038 + BACOVA_04982 0.42 -2.2 433,072 + BACOVA_04982 0.44 -2.4 433,073 - BACOVA_04982 0.44 +0.3 433,094 - BACOVA_04982 0.45 -1.4 433,103 + BACOVA_04982 0.46 -0.0 433,143 + BACOVA_04982 0.48 +1.4 433,144 - BACOVA_04982 0.48 -3.9 433,149 + BACOVA_04982 0.49 -0.9 433,150 - BACOVA_04982 0.49 -0.5 433,222 + BACOVA_04982 0.53 +2.3 433,224 + BACOVA_04982 0.53 +2.6 433,225 - BACOVA_04982 0.53 +1.2 433,258 + BACOVA_04982 0.55 -0.1 433,259 - BACOVA_04982 0.55 -1.2 433,261 + BACOVA_04982 0.56 -0.1 433,264 + BACOVA_04982 0.56 -1.3 433,265 - BACOVA_04982 0.56 -3.5 433,284 - BACOVA_04982 0.57 +2.6 433,284 - BACOVA_04982 0.57 -1.0 433,284 - BACOVA_04982 0.57 -1.4 433,315 - BACOVA_04982 0.59 -2.1 433,367 - BACOVA_04982 0.62 +3.1 433,367 - BACOVA_04982 0.62 -1.6 433,391 - BACOVA_04982 0.64 +1.2 433,392 + BACOVA_04982 0.64 -2.0 433,393 - BACOVA_04982 0.64 -1.6 433,449 + BACOVA_04982 0.67 +1.5 433,450 - BACOVA_04982 0.67 +0.8 433,460 - BACOVA_04982 0.68 -4.5 433,462 - BACOVA_04982 0.68 +4.1 433,500 + BACOVA_04982 0.70 -0.3 433,516 - BACOVA_04982 0.71 +1.3 433,521 + BACOVA_04982 0.72 -1.3 433,521 + BACOVA_04982 0.72 +1.2 433,540 + BACOVA_04982 0.73 +1.2 433,540 + BACOVA_04982 0.73 -0.1 433,545 - BACOVA_04982 0.73 -0.4 433,562 - BACOVA_04982 0.74 +1.8 433,578 + BACOVA_04982 0.75 +2.8 433,611 + BACOVA_04982 0.77 +2.4 433,626 - BACOVA_04982 0.78 -0.4 433,628 + BACOVA_04982 0.78 -1.6 433,696 - BACOVA_04982 0.83 -1.8 433,715 + BACOVA_04982 0.84 -0.3 433,716 - BACOVA_04982 0.84 -3.1 433,716 - BACOVA_04982 0.84 -1.1 433,716 - BACOVA_04982 0.84 +0.6 433,729 + BACOVA_04982 0.85 +0.9 433,729 + BACOVA_04982 0.85 -0.7 433,767 + BACOVA_04982 0.87 +0.8 433,773 + BACOVA_04982 0.87 +2.4 433,800 + BACOVA_04982 0.89 -1.5 433,801 - BACOVA_04982 0.89 +1.2 433,835 + -1.3 433,843 - +2.7 433,847 - -1.4 433,858 - +3.3 433,872 + +0.5 433,873 - +2.0 433,878 + -0.0 433,879 - -1.4 433,890 + -0.5 433,891 - -2.1 433,945 + +1.5 433,946 - +0.3 433,946 - +1.5 433,952 - +1.2 433,977 + -2.1 433,977 + +1.1 433,983 + +1.3 433,989 + -1.2 433,990 - -2.8 433,990 - -1.5 434,006 + +1.1 434,010 - +0.3 434,010 - -0.1 434,017 - +1.0 434,019 + -4.2 434,034 - +1.4 434,048 + +1.4 434,048 + +2.5 434,049 - -0.6 434,065 + -1.5 434,079 + +3.1 434,096 + -4.6 434,107 + +1.5 434,108 - +1.7 434,108 - -0.4 434,109 + -0.2 434,109 + -0.9 434,109 + -1.4 434,110 - +0.1 434,112 + +0.7 434,112 + -0.7 434,113 - -0.7 434,234 - BACOVA_04983 0.19 -1.1 434,235 + BACOVA_04983 0.19 -1.6 434,277 + BACOVA_04983 0.22 -2.7 434,281 - BACOVA_04983 0.23 +0.3 434,427 + BACOVA_04983 0.34 +1.0 434,454 + BACOVA_04983 0.36 +0.8 434,558 - BACOVA_04983 0.44 -4.1 434,618 + BACOVA_04983 0.49 +2.0 434,618 + BACOVA_04983 0.49 +0.6 434,618 + BACOVA_04983 0.49 +2.3 434,619 - BACOVA_04983 0.49 +1.7 434,619 - BACOVA_04983 0.49 +0.3 434,632 + BACOVA_04983 0.50 +0.5 434,658 + BACOVA_04983 0.52 -0.7 434,658 + BACOVA_04983 0.52 +0.9 434,658 + BACOVA_04983 0.52 -2.3 434,659 - BACOVA_04983 0.52 -0.7 434,793 + BACOVA_04983 0.62 -0.8 434,793 + BACOVA_04983 0.62 -1.6 434,895 - BACOVA_04983 0.70 -1.1 434,895 - BACOVA_04983 0.70 -0.5 434,912 - BACOVA_04983 0.72 -1.0 434,952 - BACOVA_04983 0.75 +1.6 434,982 + BACOVA_04983 0.77 +0.1 435,016 - BACOVA_04983 0.80 +0.5 435,045 + BACOVA_04983 0.82 -0.6 435,045 + BACOVA_04983 0.82 +0.1 435,045 + BACOVA_04983 0.82 +0.9 435,046 - BACOVA_04983 0.82 -3.9 435,046 - BACOVA_04983 0.82 +2.8 435,079 - BACOVA_04983 0.85 -0.4 435,093 + BACOVA_04983 0.86 -1.0 435,107 - BACOVA_04983 0.87 +0.1 435,117 + BACOVA_04983 0.88 +3.0 435,123 + BACOVA_04983 0.88 +1.1 435,181 + +0.2 435,182 - +1.2 435,184 - +1.0 435,247 - -2.2 435,255 - -1.5 435,271 - +1.3 435,288 - +1.7 435,288 - -1.2 435,289 + -1.8 435,314 - -0.1 435,319 + +1.4 435,324 - -1.7 435,324 - -3.6 435,334 - -0.4 435,359 - -2.4 435,375 + -1.5 435,375 + +0.4 435,376 - +0.6 435,446 + BACOVA_04984 0.11 +0.3 435,447 - BACOVA_04984 0.11 -2.7 435,448 + BACOVA_04984 0.11 -1.3 435,448 + BACOVA_04984 0.11 -1.2 435,448 + BACOVA_04984 0.11 -2.9 435,507 + BACOVA_04984 0.19 +2.3 435,508 - BACOVA_04984 0.19 -4.1 435,555 + BACOVA_04984 0.25 +2.0 435,593 + BACOVA_04984 0.30 +3.2 435,594 - BACOVA_04984 0.30 -0.2 435,596 - BACOVA_04984 0.31 +1.1 435,660 + BACOVA_04984 0.39 +1.6 435,660 + BACOVA_04984 0.39 -3.7 435,661 - BACOVA_04984 0.39 +3.3 435,662 + BACOVA_04984 0.39 -0.6 435,663 - BACOVA_04984 0.39 +0.1 435,673 - BACOVA_04984 0.41 +1.3 435,689 + BACOVA_04984 0.43 -1.2 435,704 + BACOVA_04984 0.45 +1.7 435,708 - BACOVA_04984 0.45 +2.7 435,760 + BACOVA_04984 0.52 +2.3 435,783 - BACOVA_04984 0.55 +2.3 435,810 + BACOVA_04984 0.58 +0.7 435,811 - BACOVA_04984 0.58 +0.9 435,813 - BACOVA_04984 0.59 -0.5 435,852 + BACOVA_04984 0.64 -2.6 435,888 + BACOVA_04984 0.68 +1.7 435,888 + BACOVA_04984 0.68 -0.5 435,890 + BACOVA_04984 0.69 +3.3 435,890 + BACOVA_04984 0.69 -1.0 435,891 - BACOVA_04984 0.69 -1.9 435,896 + BACOVA_04984 0.69 -1.6 435,901 + BACOVA_04984 0.70 +0.8 435,955 - BACOVA_04984 0.77 -2.9 435,972 + BACOVA_04984 0.79 -0.1 436,002 + BACOVA_04984 0.83 +2.6 436,045 + BACOVA_04984 0.89 +2.2 436,046 - BACOVA_04984 0.89 -2.1 436,133 + -2.6 436,138 + -0.4 436,138 + +1.4 436,140 + +1.2 436,140 + -0.1 436,143 + +2.0 436,143 + -3.9 436,144 - +1.4 436,148 + +2.1 436,152 - +1.1 436,180 - -1.0 436,210 - -3.7 436,215 - -1.9 436,217 - -3.2 436,217 - +0.1 436,219 + -2.1 436,219 + +0.4 436,220 - -1.0 436,220 - +3.3 436,256 - +2.9 436,258 + +1.4 436,259 - -2.1 436,267 + +1.8 436,267 + +0.7 436,268 - +0.3 436,274 + +2.1 436,274 + -0.8 436,275 - +1.7 436,275 - -0.8 436,275 - -1.5
Or see this region's nucleotide sequence