Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04976

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse4; day8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04975 and BACOVA_04976 are separated by 18 nucleotidesBACOVA_04976 and BACOVA_04977 are separated by 90 nucleotides BACOVA_04975: BACOVA_04975 - glycosyl hydrolase, family 88, at 421,907 to 423,316 _04975 BACOVA_04976: BACOVA_04976 - L-rhamnose 1-epimerase, at 423,335 to 423,649 _04976 BACOVA_04977: BACOVA_04977 - response regulator receiver domain protein, at 423,740 to 428,023 _04977 Position (kb) 423 424Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 422.339 kb on + strand, within BACOVA_04975at 422.472 kb on + strand, within BACOVA_04975at 422.484 kb on - strand, within BACOVA_04975at 422.527 kb on + strand, within BACOVA_04975at 422.555 kb on - strand, within BACOVA_04975at 422.557 kb on + strand, within BACOVA_04975at 422.575 kb on + strand, within BACOVA_04975at 422.576 kb on - strand, within BACOVA_04975at 422.582 kb on - strand, within BACOVA_04975at 422.612 kb on + strand, within BACOVA_04975at 422.613 kb on - strand, within BACOVA_04975at 422.635 kb on + strand, within BACOVA_04975at 422.639 kb on + strand, within BACOVA_04975at 422.640 kb on - strand, within BACOVA_04975at 422.640 kb on - strand, within BACOVA_04975at 422.640 kb on - strand, within BACOVA_04975at 422.640 kb on - strand, within BACOVA_04975at 422.708 kb on + strand, within BACOVA_04975at 422.708 kb on + strand, within BACOVA_04975at 422.709 kb on - strand, within BACOVA_04975at 422.709 kb on - strand, within BACOVA_04975at 422.725 kb on - strand, within BACOVA_04975at 422.809 kb on - strand, within BACOVA_04975at 422.849 kb on + strand, within BACOVA_04975at 422.850 kb on - strand, within BACOVA_04975at 422.865 kb on + strand, within BACOVA_04975at 422.865 kb on + strand, within BACOVA_04975at 422.933 kb on + strand, within BACOVA_04975at 422.960 kb on + strand, within BACOVA_04975at 422.960 kb on + strand, within BACOVA_04975at 422.961 kb on - strand, within BACOVA_04975at 422.965 kb on - strand, within BACOVA_04975at 422.965 kb on - strand, within BACOVA_04975at 422.966 kb on + strand, within BACOVA_04975at 423.124 kb on + strand, within BACOVA_04975at 423.126 kb on - strand, within BACOVA_04975at 423.147 kb on + strand, within BACOVA_04975at 423.148 kb on - strand, within BACOVA_04975at 423.148 kb on - strand, within BACOVA_04975at 423.148 kb on - strand, within BACOVA_04975at 423.204 kb on + strandat 423.248 kb on + strandat 423.251 kb on + strandat 423.251 kb on + strandat 423.252 kb on - strandat 423.328 kb on + strandat 423.328 kb on + strandat 423.329 kb on - strandat 423.363 kb on + strandat 423.386 kb on + strand, within BACOVA_04976at 423.386 kb on + strand, within BACOVA_04976at 423.387 kb on - strand, within BACOVA_04976at 423.464 kb on + strand, within BACOVA_04976at 423.485 kb on - strand, within BACOVA_04976at 423.539 kb on - strand, within BACOVA_04976at 423.539 kb on - strand, within BACOVA_04976at 423.570 kb on - strand, within BACOVA_04976at 423.570 kb on - strand, within BACOVA_04976at 423.571 kb on + strand, within BACOVA_04976at 423.571 kb on + strand, within BACOVA_04976at 423.662 kb on + strandat 423.683 kb on + strandat 423.737 kb on + strandat 423.738 kb on - strandat 423.738 kb on - strandat 423.767 kb on - strandat 423.797 kb on + strandat 423.797 kb on + strandat 423.854 kb on - strandat 423.868 kb on + strandat 423.868 kb on + strandat 423.868 kb on + strandat 423.868 kb on + strandat 423.869 kb on - strandat 423.881 kb on - strandat 423.905 kb on - strandat 423.926 kb on + strandat 423.976 kb on - strandat 423.994 kb on + strandat 423.995 kb on - strandat 423.995 kb on - strandat 423.995 kb on - strandat 423.998 kb on + strandat 424.015 kb on + strandat 424.015 kb on + strandat 424.015 kb on + strandat 424.016 kb on - strandat 424.016 kb on - strandat 424.057 kb on + strandat 424.057 kb on + strandat 424.058 kb on - strandat 424.058 kb on - strandat 424.114 kb on - strandat 424.225 kb on + strand, within BACOVA_04977at 424.226 kb on - strand, within BACOVA_04977at 424.230 kb on + strand, within BACOVA_04977at 424.231 kb on - strand, within BACOVA_04977at 424.301 kb on - strand, within BACOVA_04977at 424.394 kb on + strand, within BACOVA_04977at 424.394 kb on + strand, within BACOVA_04977at 424.394 kb on + strand, within BACOVA_04977at 424.418 kb on - strand, within BACOVA_04977at 424.432 kb on + strand, within BACOVA_04977at 424.432 kb on + strand, within BACOVA_04977at 424.436 kb on + strand, within BACOVA_04977at 424.436 kb on + strand, within BACOVA_04977at 424.436 kb on + strand, within BACOVA_04977at 424.436 kb on + strand, within BACOVA_04977at 424.437 kb on - strand, within BACOVA_04977at 424.535 kb on - strand, within BACOVA_04977at 424.565 kb on + strand, within BACOVA_04977at 424.567 kb on + strand, within BACOVA_04977at 424.568 kb on - strand, within BACOVA_04977at 424.568 kb on - strand, within BACOVA_04977at 424.568 kb on - strand, within BACOVA_04977at 424.571 kb on + strand, within BACOVA_04977at 424.571 kb on + strand, within BACOVA_04977at 424.642 kb on + strand, within BACOVA_04977at 424.642 kb on + strand, within BACOVA_04977

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse4; day8
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422,339 + BACOVA_04975 0.31 -0.5
422,472 + BACOVA_04975 0.40 +3.3
422,484 - BACOVA_04975 0.41 +0.6
422,527 + BACOVA_04975 0.44 +4.6
422,555 - BACOVA_04975 0.46 -1.6
422,557 + BACOVA_04975 0.46 -0.4
422,575 + BACOVA_04975 0.47 +1.0
422,576 - BACOVA_04975 0.47 -2.6
422,582 - BACOVA_04975 0.48 -2.6
422,612 + BACOVA_04975 0.50 +0.7
422,613 - BACOVA_04975 0.50 -2.0
422,635 + BACOVA_04975 0.52 +1.1
422,639 + BACOVA_04975 0.52 -3.0
422,640 - BACOVA_04975 0.52 -1.9
422,640 - BACOVA_04975 0.52 -1.1
422,640 - BACOVA_04975 0.52 +0.4
422,640 - BACOVA_04975 0.52 -0.6
422,708 + BACOVA_04975 0.57 +3.5
422,708 + BACOVA_04975 0.57 -0.9
422,709 - BACOVA_04975 0.57 -2.7
422,709 - BACOVA_04975 0.57 -1.5
422,725 - BACOVA_04975 0.58 -1.4
422,809 - BACOVA_04975 0.64 +2.0
422,849 + BACOVA_04975 0.67 +1.4
422,850 - BACOVA_04975 0.67 -1.8
422,865 + BACOVA_04975 0.68 -3.8
422,865 + BACOVA_04975 0.68 -1.4
422,933 + BACOVA_04975 0.73 +2.3
422,960 + BACOVA_04975 0.75 +0.7
422,960 + BACOVA_04975 0.75 -1.3
422,961 - BACOVA_04975 0.75 +0.2
422,965 - BACOVA_04975 0.75 -1.6
422,965 - BACOVA_04975 0.75 +2.3
422,966 + BACOVA_04975 0.75 +2.3
423,124 + BACOVA_04975 0.86 -0.3
423,126 - BACOVA_04975 0.86 -3.5
423,147 + BACOVA_04975 0.88 +1.9
423,148 - BACOVA_04975 0.88 -3.9
423,148 - BACOVA_04975 0.88 -4.2
423,148 - BACOVA_04975 0.88 +2.3
423,204 + +2.7
423,248 + +3.1
423,251 + -1.4
423,251 + +2.0
423,252 - -3.3
423,328 + -1.3
423,328 + +1.5
423,329 - -0.8
423,363 + -0.1
423,386 + BACOVA_04976 0.16 -0.2
423,386 + BACOVA_04976 0.16 -1.3
423,387 - BACOVA_04976 0.17 -1.1
423,464 + BACOVA_04976 0.41 +0.4
423,485 - BACOVA_04976 0.48 +0.9
423,539 - BACOVA_04976 0.65 -1.0
423,539 - BACOVA_04976 0.65 -5.3
423,570 - BACOVA_04976 0.75 -2.8
423,570 - BACOVA_04976 0.75 -2.9
423,571 + BACOVA_04976 0.75 +2.1
423,571 + BACOVA_04976 0.75 +1.7
423,662 + +3.7
423,683 + +2.0
423,737 + +0.3
423,738 - -2.7
423,738 - +0.5
423,767 - -2.4
423,797 + -3.3
423,797 + +0.1
423,854 - -1.0
423,868 + -1.5
423,868 + +1.3
423,868 + -1.0
423,868 + -2.1
423,869 - -1.8
423,881 - -2.1
423,905 - -0.6
423,926 + -1.7
423,976 - -2.0
423,994 + -2.0
423,995 - -0.9
423,995 - -2.6
423,995 - -1.3
423,998 + -1.7
424,015 + -1.8
424,015 + -1.4
424,015 + +2.2
424,016 - -3.6
424,016 - -3.7
424,057 + -2.3
424,057 + -1.6
424,058 - -2.8
424,058 - +0.5
424,114 - -1.4
424,225 + BACOVA_04977 0.11 -1.8
424,226 - BACOVA_04977 0.11 -3.7
424,230 + BACOVA_04977 0.11 +0.8
424,231 - BACOVA_04977 0.11 +0.7
424,301 - BACOVA_04977 0.13 -1.4
424,394 + BACOVA_04977 0.15 -2.7
424,394 + BACOVA_04977 0.15 -1.2
424,394 + BACOVA_04977 0.15 -0.9
424,418 - BACOVA_04977 0.16 -1.3
424,432 + BACOVA_04977 0.16 +0.3
424,432 + BACOVA_04977 0.16 -1.0
424,436 + BACOVA_04977 0.16 -2.7
424,436 + BACOVA_04977 0.16 -1.4
424,436 + BACOVA_04977 0.16 -2.5
424,436 + BACOVA_04977 0.16 +0.3
424,437 - BACOVA_04977 0.16 -2.9
424,535 - BACOVA_04977 0.19 -0.3
424,565 + BACOVA_04977 0.19 -2.1
424,567 + BACOVA_04977 0.19 -2.3
424,568 - BACOVA_04977 0.19 -2.6
424,568 - BACOVA_04977 0.19 -3.6
424,568 - BACOVA_04977 0.19 -0.3
424,571 + BACOVA_04977 0.19 -1.4
424,571 + BACOVA_04977 0.19 -1.3
424,642 + BACOVA_04977 0.21 -3.0
424,642 + BACOVA_04977 0.21 -1.2

Or see this region's nucleotide sequence