Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03604

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse4; day8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03603 and BACOVA_03604 are separated by 92 nucleotidesBACOVA_03604 and BACOVA_03605 are separated by 19 nucleotides BACOVA_03603: BACOVA_03603 - L-rhamnose-proton symport protein (RhaT), at 400,608 to 401,627 _03603 BACOVA_03604: BACOVA_03604 - putative rhamnulose-1-phosphate aldolase, at 401,720 to 402,529 _03604 BACOVA_03605: BACOVA_03605 - lactaldehyde reductase, at 402,549 to 403,703 _03605 Position (kb) 401 402 403Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 400.721 kb on - strand, within BACOVA_03603at 400.766 kb on - strand, within BACOVA_03603at 400.841 kb on + strand, within BACOVA_03603at 400.841 kb on + strand, within BACOVA_03603at 400.843 kb on + strand, within BACOVA_03603at 400.855 kb on + strand, within BACOVA_03603at 400.888 kb on - strand, within BACOVA_03603at 400.913 kb on + strand, within BACOVA_03603at 400.914 kb on - strand, within BACOVA_03603at 400.925 kb on + strand, within BACOVA_03603at 401.034 kb on - strand, within BACOVA_03603at 401.034 kb on - strand, within BACOVA_03603at 401.040 kb on - strand, within BACOVA_03603at 401.040 kb on - strand, within BACOVA_03603at 401.040 kb on - strand, within BACOVA_03603at 401.199 kb on - strand, within BACOVA_03603at 401.238 kb on + strand, within BACOVA_03603at 401.239 kb on - strand, within BACOVA_03603at 401.322 kb on - strand, within BACOVA_03603at 401.345 kb on + strand, within BACOVA_03603at 401.346 kb on - strand, within BACOVA_03603at 401.346 kb on - strand, within BACOVA_03603at 401.396 kb on - strand, within BACOVA_03603at 401.399 kb on - strand, within BACOVA_03603at 401.399 kb on - strand, within BACOVA_03603at 401.403 kb on + strand, within BACOVA_03603at 401.403 kb on + strand, within BACOVA_03603at 401.403 kb on + strand, within BACOVA_03603at 401.403 kb on + strand, within BACOVA_03603at 401.403 kb on + strand, within BACOVA_03603at 401.403 kb on + strand, within BACOVA_03603at 401.403 kb on + strand, within BACOVA_03603at 401.404 kb on - strand, within BACOVA_03603at 401.404 kb on - strand, within BACOVA_03603at 401.404 kb on - strand, within BACOVA_03603at 401.500 kb on + strand, within BACOVA_03603at 401.563 kb on + strandat 401.563 kb on + strandat 401.563 kb on + strandat 401.564 kb on - strandat 401.564 kb on - strandat 401.564 kb on - strandat 401.564 kb on - strandat 401.564 kb on - strandat 401.564 kb on - strandat 401.564 kb on - strandat 401.594 kb on + strandat 401.595 kb on - strandat 401.690 kb on + strandat 401.711 kb on - strandat 401.714 kb on + strandat 401.715 kb on - strandat 401.716 kb on + strandat 401.716 kb on + strandat 401.719 kb on - strandat 401.763 kb on + strandat 401.764 kb on - strandat 401.789 kb on + strandat 401.818 kb on + strand, within BACOVA_03604at 401.818 kb on + strand, within BACOVA_03604at 401.819 kb on - strand, within BACOVA_03604at 401.819 kb on - strand, within BACOVA_03604at 401.831 kb on - strand, within BACOVA_03604at 401.832 kb on + strand, within BACOVA_03604at 401.832 kb on + strand, within BACOVA_03604at 401.833 kb on - strand, within BACOVA_03604at 401.833 kb on - strand, within BACOVA_03604at 401.943 kb on - strand, within BACOVA_03604at 401.959 kb on + strand, within BACOVA_03604at 402.036 kb on - strand, within BACOVA_03604at 402.096 kb on + strand, within BACOVA_03604at 402.097 kb on - strand, within BACOVA_03604at 402.130 kb on + strand, within BACOVA_03604at 402.142 kb on - strand, within BACOVA_03604at 402.226 kb on + strand, within BACOVA_03604at 402.286 kb on - strand, within BACOVA_03604at 402.289 kb on + strand, within BACOVA_03604at 402.289 kb on + strand, within BACOVA_03604at 402.290 kb on - strand, within BACOVA_03604at 402.314 kb on - strand, within BACOVA_03604at 402.335 kb on + strand, within BACOVA_03604at 402.336 kb on - strand, within BACOVA_03604at 402.366 kb on + strand, within BACOVA_03604at 402.414 kb on + strand, within BACOVA_03604at 402.449 kb on - strandat 402.476 kb on - strandat 402.548 kb on + strandat 402.548 kb on + strandat 402.560 kb on + strandat 402.635 kb on + strandat 402.698 kb on + strand, within BACOVA_03605at 402.699 kb on - strand, within BACOVA_03605at 402.699 kb on - strand, within BACOVA_03605at 402.703 kb on + strand, within BACOVA_03605at 402.735 kb on + strand, within BACOVA_03605at 402.735 kb on + strand, within BACOVA_03605at 402.736 kb on - strand, within BACOVA_03605at 402.736 kb on - strand, within BACOVA_03605at 402.793 kb on - strand, within BACOVA_03605at 402.944 kb on + strand, within BACOVA_03605at 402.945 kb on - strand, within BACOVA_03605at 402.962 kb on + strand, within BACOVA_03605at 403.004 kb on + strand, within BACOVA_03605at 403.005 kb on - strand, within BACOVA_03605at 403.064 kb on - strand, within BACOVA_03605at 403.067 kb on + strand, within BACOVA_03605at 403.067 kb on + strand, within BACOVA_03605at 403.068 kb on - strand, within BACOVA_03605at 403.090 kb on - strand, within BACOVA_03605at 403.155 kb on + strand, within BACOVA_03605at 403.156 kb on - strand, within BACOVA_03605at 403.157 kb on + strand, within BACOVA_03605at 403.178 kb on + strand, within BACOVA_03605at 403.250 kb on + strand, within BACOVA_03605at 403.250 kb on + strand, within BACOVA_03605at 403.290 kb on + strand, within BACOVA_03605at 403.290 kb on + strand, within BACOVA_03605at 403.290 kb on + strand, within BACOVA_03605at 403.290 kb on + strand, within BACOVA_03605at 403.291 kb on - strand, within BACOVA_03605at 403.291 kb on - strand, within BACOVA_03605at 403.291 kb on - strand, within BACOVA_03605at 403.291 kb on - strand, within BACOVA_03605at 403.293 kb on - strand, within BACOVA_03605at 403.293 kb on - strand, within BACOVA_03605at 403.366 kb on - strand, within BACOVA_03605at 403.366 kb on - strand, within BACOVA_03605at 403.419 kb on + strand, within BACOVA_03605at 403.457 kb on + strand, within BACOVA_03605at 403.458 kb on - strand, within BACOVA_03605

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse4; day8
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400,721 - BACOVA_03603 0.11 -1.1
400,766 - BACOVA_03603 0.15 -1.8
400,841 + BACOVA_03603 0.23 +0.9
400,841 + BACOVA_03603 0.23 -3.2
400,843 + BACOVA_03603 0.23 +1.6
400,855 + BACOVA_03603 0.24 +1.1
400,888 - BACOVA_03603 0.27 +2.0
400,913 + BACOVA_03603 0.30 +0.0
400,914 - BACOVA_03603 0.30 -3.9
400,925 + BACOVA_03603 0.31 -0.6
401,034 - BACOVA_03603 0.42 -0.0
401,034 - BACOVA_03603 0.42 -0.3
401,040 - BACOVA_03603 0.42 -0.2
401,040 - BACOVA_03603 0.42 -3.9
401,040 - BACOVA_03603 0.42 +2.8
401,199 - BACOVA_03603 0.58 +0.9
401,238 + BACOVA_03603 0.62 -1.7
401,239 - BACOVA_03603 0.62 -2.7
401,322 - BACOVA_03603 0.70 -3.1
401,345 + BACOVA_03603 0.72 -2.0
401,346 - BACOVA_03603 0.72 -0.2
401,346 - BACOVA_03603 0.72 +2.6
401,396 - BACOVA_03603 0.77 -2.4
401,399 - BACOVA_03603 0.78 -1.7
401,399 - BACOVA_03603 0.78 -1.9
401,403 + BACOVA_03603 0.78 -2.6
401,403 + BACOVA_03603 0.78 -0.5
401,403 + BACOVA_03603 0.78 -4.0
401,403 + BACOVA_03603 0.78 -0.9
401,403 + BACOVA_03603 0.78 -4.4
401,403 + BACOVA_03603 0.78 +1.2
401,403 + BACOVA_03603 0.78 +1.1
401,404 - BACOVA_03603 0.78 -2.6
401,404 - BACOVA_03603 0.78 -1.7
401,404 - BACOVA_03603 0.78 -0.9
401,500 + BACOVA_03603 0.87 -1.6
401,563 + -1.3
401,563 + -1.7
401,563 + +0.3
401,564 - +1.1
401,564 - -1.5
401,564 - -0.4
401,564 - -1.6
401,564 - -0.2
401,564 - -1.1
401,564 - -3.0
401,594 + +2.0
401,595 - -0.4
401,690 + -1.5
401,711 - -2.4
401,714 + -0.6
401,715 - -1.7
401,716 + -0.4
401,716 + -1.8
401,719 - -1.2
401,763 + -2.4
401,764 - -4.3
401,789 + -3.3
401,818 + BACOVA_03604 0.12 -3.2
401,818 + BACOVA_03604 0.12 -1.2
401,819 - BACOVA_03604 0.12 -2.0
401,819 - BACOVA_03604 0.12 -1.9
401,831 - BACOVA_03604 0.14 -2.0
401,832 + BACOVA_03604 0.14 -3.5
401,832 + BACOVA_03604 0.14 -1.5
401,833 - BACOVA_03604 0.14 +0.0
401,833 - BACOVA_03604 0.14 -0.9
401,943 - BACOVA_03604 0.28 +0.7
401,959 + BACOVA_03604 0.30 -3.7
402,036 - BACOVA_03604 0.39 -1.4
402,096 + BACOVA_03604 0.46 -2.7
402,097 - BACOVA_03604 0.47 -0.4
402,130 + BACOVA_03604 0.51 -1.1
402,142 - BACOVA_03604 0.52 -1.9
402,226 + BACOVA_03604 0.62 -4.6
402,286 - BACOVA_03604 0.70 -3.6
402,289 + BACOVA_03604 0.70 -1.9
402,289 + BACOVA_03604 0.70 -0.8
402,290 - BACOVA_03604 0.70 -4.1
402,314 - BACOVA_03604 0.73 -4.3
402,335 + BACOVA_03604 0.76 -3.9
402,336 - BACOVA_03604 0.76 -1.3
402,366 + BACOVA_03604 0.80 -2.2
402,414 + BACOVA_03604 0.86 -0.8
402,449 - -0.8
402,476 - -2.4
402,548 + -2.0
402,548 + -3.4
402,560 + +2.5
402,635 + -1.1
402,698 + BACOVA_03605 0.13 +1.5
402,699 - BACOVA_03605 0.13 -2.7
402,699 - BACOVA_03605 0.13 +0.0
402,703 + BACOVA_03605 0.13 +1.5
402,735 + BACOVA_03605 0.16 -0.9
402,735 + BACOVA_03605 0.16 +1.5
402,736 - BACOVA_03605 0.16 -1.1
402,736 - BACOVA_03605 0.16 -0.8
402,793 - BACOVA_03605 0.21 +0.9
402,944 + BACOVA_03605 0.34 -2.9
402,945 - BACOVA_03605 0.34 -0.9
402,962 + BACOVA_03605 0.36 +2.3
403,004 + BACOVA_03605 0.39 -1.1
403,005 - BACOVA_03605 0.39 +0.7
403,064 - BACOVA_03605 0.45 +1.1
403,067 + BACOVA_03605 0.45 -2.5
403,067 + BACOVA_03605 0.45 -1.5
403,068 - BACOVA_03605 0.45 -1.6
403,090 - BACOVA_03605 0.47 +1.3
403,155 + BACOVA_03605 0.52 -0.2
403,156 - BACOVA_03605 0.53 +2.3
403,157 + BACOVA_03605 0.53 +1.6
403,178 + BACOVA_03605 0.54 +0.4
403,250 + BACOVA_03605 0.61 +2.4
403,250 + BACOVA_03605 0.61 +2.1
403,290 + BACOVA_03605 0.64 +1.9
403,290 + BACOVA_03605 0.64 -1.0
403,290 + BACOVA_03605 0.64 +2.7
403,290 + BACOVA_03605 0.64 -1.0
403,291 - BACOVA_03605 0.64 -1.1
403,291 - BACOVA_03605 0.64 +1.0
403,291 - BACOVA_03605 0.64 -2.0
403,291 - BACOVA_03605 0.64 +2.2
403,293 - BACOVA_03605 0.64 +0.1
403,293 - BACOVA_03605 0.64 -1.5
403,366 - BACOVA_03605 0.71 -2.5
403,366 - BACOVA_03605 0.71 +1.6
403,419 + BACOVA_03605 0.75 -1.8
403,457 + BACOVA_03605 0.79 -1.7
403,458 - BACOVA_03605 0.79 -1.3

Or see this region's nucleotide sequence