Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS03195

Experiment: Beta-Lactose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Beta-Lactose 2.5 mg/ml (C)
925,997	+		ABI39_RS03190	0.82	-0.4
926,000	+		ABI39_RS03190	0.82	-0.9
926,019	+		ABI39_RS03190	0.83	-0.8
926,156	-		ABI39_RS03190	0.86	-0.5
926,538	+				+0.2
926,563	-				+0.6
926,584	+				+0.4
926,665	+				-0.1
926,665	+				+0.5
926,665	+				+0.3
926,697	-				-0.5
926,815	+				-1.7
926,832	+				-0.5
926,833	-				+0.3
926,842	-				-1.4
926,905	-				-0.7
927,014	+				+0.4
927,296	-		ABI39_RS03195	0.12	-0.6
927,300	+		ABI39_RS03195	0.12	+0.6
927,301	-		ABI39_RS03195	0.12	+0.3
927,473	+		ABI39_RS03195	0.16	+1.1
927,603	-		ABI39_RS03195	0.19	-2.5
927,844	+		ABI39_RS03195	0.25	-1.0
927,845	-		ABI39_RS03195	0.25	-0.2
927,849	-		ABI39_RS03195	0.25	-0.8
927,980	-		ABI39_RS03195	0.28	+0.4
928,185	+		ABI39_RS03195	0.33	-0.7
928,248	-		ABI39_RS03195	0.34	-0.8
928,356	+		ABI39_RS03195	0.37	-0.3
928,363	+		ABI39_RS03195	0.37	-0.9
928,466	+		ABI39_RS03195	0.40	-0.7
928,568	+		ABI39_RS03195	0.42	+0.3
928,569	-		ABI39_RS03195	0.42	+0.1
928,626	+		ABI39_RS03195	0.43	-1.0
928,627	-		ABI39_RS03195	0.43	-0.8
928,765	-		ABI39_RS03195	0.47	+0.3
928,772	+		ABI39_RS03195	0.47	-0.5
928,773	-		ABI39_RS03195	0.47	-1.2
928,782	-		ABI39_RS03195	0.47	-0.8
928,910	+		ABI39_RS03195	0.50	-0.6
928,911	-		ABI39_RS03195	0.50	+0.1
929,098	+		ABI39_RS03195	0.55	-0.5
929,105	-		ABI39_RS03195	0.55	+0.5
929,150	+		ABI39_RS03195	0.56	-1.5
929,245	-		ABI39_RS03195	0.58	+0.3
929,308	+		ABI39_RS03195	0.60	-0.1
929,312	+		ABI39_RS03195	0.60	-2.6
929,522	-		ABI39_RS03195	0.65	-0.7
929,556	-		ABI39_RS03195	0.66	-0.8
929,755	-		ABI39_RS03195	0.70	-1.7
930,369	-		ABI39_RS03195	0.85	-1.2
930,402	+		ABI39_RS03195	0.86	-1.2
930,402	+		ABI39_RS03195	0.86	-1.3
930,406	+		ABI39_RS03195	0.86	+0.4
930,406	+		ABI39_RS03195	0.86	+0.6
930,407	-		ABI39_RS03195	0.86	+0.1
930,407	-		ABI39_RS03195	0.86	-0.1
930,524	+		ABI39_RS03195	0.89	+2.1
930,525	-		ABI39_RS03195	0.89	-0.3
930,564	-		ABI39_RS03195	0.90	-0.5
930,640	-				-0.4
930,652	-				+0.3
930,659	+				+0.5
930,661	+				+0.1
930,828	-				+0.7
930,950	+				-0.3
930,975	-				+0.6
930,978	-				+0.5
930,986	+				+0.0
931,001	-				-0.3
931,010	+				+0.4
931,023	-				+0.0
931,025	-				-1.1
931,125	-		ABI39_RS03200	0.52	+0.6
931,192	-		ABI39_RS03200	0.84	-0.8
931,192	-		ABI39_RS03200	0.84	-0.8
931,300	-				+0.9
931,302	+				-0.6
931,302	+				+0.0
931,303	-				+1.2
931,303	-				+0.0
931,305	+				+0.4
931,307	+				+0.1
931,416	+				+0.5
931,434	+				+0.8
931,523	+				-0.4
931,523	+				+0.6
931,690	+		ABI39_RS03205	0.24	+0.8
931,696	+		ABI39_RS03205	0.25	-0.5
931,932	+		ABI39_RS03205	0.48	-0.2
931,937	+		ABI39_RS03205	0.48	+0.3
931,961	-		ABI39_RS03205	0.51	+1.0
931,961	-		ABI39_RS03205	0.51	-0.6
931,966	-		ABI39_RS03205	0.51	+0.2