Experiment: Beta-Lactose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00145 and ABI39_RS00150 are separated by 27 nucleotides ABI39_RS00150 and ABI39_RS00155 overlap by 4 nucleotides
ABI39_RS00145: ABI39_RS00145 - 9-O-acetylesterase, at 33,580 to 35,517
_RS00145
ABI39_RS00150: ABI39_RS00150 - alpha-glucuronidase, at 35,545 to 37,590
_RS00150
ABI39_RS00155: ABI39_RS00155 - glycosyl hydrolase 115 family protein, at 37,587 to 40,181
_RS00155
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -1
0
1
2 at 34.702 kb on - strand, within ABI39_RS00145 at 34.723 kb on - strand, within ABI39_RS00145 at 34.855 kb on - strand, within ABI39_RS00145 at 34.980 kb on - strand, within ABI39_RS00145 at 34.980 kb on - strand, within ABI39_RS00145 at 35.141 kb on - strand, within ABI39_RS00145 at 35.504 kb on - strand at 35.509 kb on - strand at 35.533 kb on - strand at 35.542 kb on - strand at 35.762 kb on - strand, within ABI39_RS00150 at 35.803 kb on + strand, within ABI39_RS00150 at 35.936 kb on + strand, within ABI39_RS00150 at 36.032 kb on + strand, within ABI39_RS00150 at 36.033 kb on - strand, within ABI39_RS00150 at 36.135 kb on + strand, within ABI39_RS00150 at 36.136 kb on - strand, within ABI39_RS00150 at 36.136 kb on - strand, within ABI39_RS00150 at 36.137 kb on + strand, within ABI39_RS00150 at 36.207 kb on + strand, within ABI39_RS00150 at 36.376 kb on + strand, within ABI39_RS00150 at 36.377 kb on - strand, within ABI39_RS00150 at 36.507 kb on - strand, within ABI39_RS00150 at 36.806 kb on - strand, within ABI39_RS00150 at 36.902 kb on + strand, within ABI39_RS00150 at 36.910 kb on + strand, within ABI39_RS00150 at 37.001 kb on - strand, within ABI39_RS00150 at 37.196 kb on - strand, within ABI39_RS00150 at 37.394 kb on - strand at 37.418 kb on + strand at 37.640 kb on - strand at 37.640 kb on - strand at 37.640 kb on - strand at 37.643 kb on + strand at 37.644 kb on - strand at 37.721 kb on - strand at 37.721 kb on - strand at 37.806 kb on + strand at 37.974 kb on - strand, within ABI39_RS00155 at 38.036 kb on + strand, within ABI39_RS00155 at 38.143 kb on + strand, within ABI39_RS00155 at 38.226 kb on - strand, within ABI39_RS00155 at 38.232 kb on + strand, within ABI39_RS00155 at 38.288 kb on - strand, within ABI39_RS00155 at 38.373 kb on + strand, within ABI39_RS00155 at 38.373 kb on + strand, within ABI39_RS00155 at 38.373 kb on + strand, within ABI39_RS00155 at 38.522 kb on - strand, within ABI39_RS00155 at 38.522 kb on - strand, within ABI39_RS00155 at 38.568 kb on - strand, within ABI39_RS00155 at 38.568 kb on - strand, within ABI39_RS00155
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 2.5 mg/ml (C) remove 34,702 - ABI39_RS00145 0.58 -0.8 34,723 - ABI39_RS00145 0.59 +0.9 34,855 - ABI39_RS00145 0.66 -1.3 34,980 - ABI39_RS00145 0.72 +0.3 34,980 - ABI39_RS00145 0.72 +0.8 35,141 - ABI39_RS00145 0.81 +0.7 35,504 - -0.5 35,509 - +1.8 35,533 - -0.2 35,542 - -1.0 35,762 - ABI39_RS00150 0.11 +0.5 35,803 + ABI39_RS00150 0.13 -0.7 35,936 + ABI39_RS00150 0.19 +0.6 36,032 + ABI39_RS00150 0.24 +0.5 36,033 - ABI39_RS00150 0.24 +2.0 36,135 + ABI39_RS00150 0.29 -0.2 36,136 - ABI39_RS00150 0.29 -0.7 36,136 - ABI39_RS00150 0.29 +0.9 36,137 + ABI39_RS00150 0.29 +0.1 36,207 + ABI39_RS00150 0.32 +0.4 36,376 + ABI39_RS00150 0.41 +0.7 36,377 - ABI39_RS00150 0.41 -0.8 36,507 - ABI39_RS00150 0.47 +0.3 36,806 - ABI39_RS00150 0.62 +0.2 36,902 + ABI39_RS00150 0.66 +0.6 36,910 + ABI39_RS00150 0.67 +0.5 37,001 - ABI39_RS00150 0.71 +0.5 37,196 - ABI39_RS00150 0.81 +1.3 37,394 - +1.1 37,418 + -0.5 37,640 - +0.4 37,640 - -0.0 37,640 - +0.2 37,643 + +0.8 37,644 - -0.5 37,721 - +0.0 37,721 - +0.6 37,806 + +0.3 37,974 - ABI39_RS00155 0.15 +0.5 38,036 + ABI39_RS00155 0.17 -0.6 38,143 + ABI39_RS00155 0.21 +0.6 38,226 - ABI39_RS00155 0.25 +0.7 38,232 + ABI39_RS00155 0.25 +0.6 38,288 - ABI39_RS00155 0.27 -0.6 38,373 + ABI39_RS00155 0.30 -0.5 38,373 + ABI39_RS00155 0.30 +0.8 38,373 + ABI39_RS00155 0.30 +0.2 38,522 - ABI39_RS00155 0.36 +0.6 38,522 - ABI39_RS00155 0.36 +0.3 38,568 - ABI39_RS00155 0.38 +1.0 38,568 - ABI39_RS00155 0.38 +1.0
Or see this region's nucleotide sequence