Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS03480

Experiment: Beta-Lactose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Beta-Lactose 2.5 mg/ml (C)
1,011,553	+		ABI39_RS03475	0.76	+0.3
1,011,554	-		ABI39_RS03475	0.76	-0.8
1,011,554	-		ABI39_RS03475	0.76	+0.8
1,011,556	-		ABI39_RS03475	0.76	+0.8
1,011,587	-		ABI39_RS03475	0.77	+0.5
1,011,712	-		ABI39_RS03475	0.81	+0.3
1,011,800	+		ABI39_RS03475	0.83	-0.5
1,011,804	+		ABI39_RS03475	0.84	+0.3
1,011,805	-		ABI39_RS03475	0.84	+0.6
1,011,838	+		ABI39_RS03475	0.85	-0.3
1,011,879	-		ABI39_RS03475	0.86	-0.1
1,012,019	+		ABI39_RS03475	0.90	-0.3
1,012,020	-				+0.8
1,012,114	-				+0.0
1,012,130	+				-0.9
1,012,131	-				+1.6
1,012,176	-				+0.3
1,012,271	-				-0.2
1,012,283	-				-0.1
1,012,467	-				-0.4
1,012,524	+		ABI39_RS03480	0.11	-0.1
1,012,569	+		ABI39_RS03480	0.15	+0.7
1,012,570	-		ABI39_RS03480	0.15	+0.0
1,012,608	+		ABI39_RS03480	0.17	+0.4
1,012,643	+		ABI39_RS03480	0.20	-1.0
1,012,806	+		ABI39_RS03480	0.32	+0.1
1,012,810	+		ABI39_RS03480	0.32	+0.0
1,012,811	-		ABI39_RS03480	0.32	+0.0
1,012,952	-		ABI39_RS03480	0.42	+0.9
1,012,953	+		ABI39_RS03480	0.42	-0.9
1,012,971	+		ABI39_RS03480	0.43	-0.4
1,012,981	+		ABI39_RS03480	0.44	+1.9
1,013,032	+		ABI39_RS03480	0.48	+0.4
1,013,033	-		ABI39_RS03480	0.48	+0.2
1,013,033	-		ABI39_RS03480	0.48	-0.3
1,013,308	+		ABI39_RS03480	0.68	-1.0
1,013,311	+		ABI39_RS03480	0.68	+0.2
1,013,312	-		ABI39_RS03480	0.68	+0.8
1,013,375	-		ABI39_RS03480	0.72	-0.7
1,013,378	+		ABI39_RS03480	0.73	+0.8
1,013,378	+		ABI39_RS03480	0.73	-1.4
1,013,379	-		ABI39_RS03480	0.73	-1.1
1,013,379	-		ABI39_RS03480	0.73	-0.1
1,013,382	+		ABI39_RS03480	0.73	+0.9
1,013,383	-		ABI39_RS03480	0.73	-0.1
1,013,700	+				-0.1
1,013,725	+				+0.5
1,013,755	+				-0.6
1,013,762	+				+0.1
1,013,765	+				+0.1
1,013,911	+				-0.1
1,014,101	+				-0.9
1,014,113	-				-0.8
1,014,181	+				-0.1
1,014,295	-		ABI39_RS03485	0.14	-0.4
1,014,332	+		ABI39_RS03485	0.16	+0.2
1,014,385	+		ABI39_RS03485	0.18	+0.2
1,014,385	+		ABI39_RS03485	0.18	-1.8
1,014,385	+		ABI39_RS03485	0.18	-1.0
1,014,386	-		ABI39_RS03485	0.18	+0.8
1,014,388	-		ABI39_RS03485	0.18	+0.4
1,014,422	-		ABI39_RS03485	0.20	+0.6
1,014,550	-		ABI39_RS03485	0.25	+0.2
1,014,558	-		ABI39_RS03485	0.25	-1.0