Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS03465

Experiment: D-Raffinose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Raffinose 2.5 mg/ml (C)
1,002,021	+		ABI39_RS03460	0.66	+0.1
1,002,034	-		ABI39_RS03460	0.67	+0.4
1,002,039	-		ABI39_RS03460	0.67	+0.2
1,002,040	+		ABI39_RS03460	0.67	+0.1
1,002,040	+		ABI39_RS03460	0.67	-0.8
1,002,040	+		ABI39_RS03460	0.67	-0.5
1,002,043	-		ABI39_RS03460	0.67	+0.2
1,002,044	+		ABI39_RS03460	0.67	+0.1
1,002,045	-		ABI39_RS03460	0.67	-0.1
1,002,047	+		ABI39_RS03460	0.67	+0.6
1,002,048	-		ABI39_RS03460	0.67	+0.5
1,002,063	+		ABI39_RS03460	0.68	-0.5
1,002,064	-		ABI39_RS03460	0.68	+0.0
1,002,099	+		ABI39_RS03460	0.70	+0.9
1,002,107	+		ABI39_RS03460	0.70	+0.2
1,002,107	+		ABI39_RS03460	0.70	-0.5
1,002,187	+		ABI39_RS03460	0.74	+0.3
1,002,357	+		ABI39_RS03460	0.83	-0.0
1,002,358	-		ABI39_RS03460	0.83	-0.5
1,002,358	-		ABI39_RS03460	0.83	+0.5
1,002,362	-		ABI39_RS03460	0.83	+0.1
1,002,530	-				-0.8
1,002,606	+				-0.2
1,002,639	-				+0.2
1,002,699	-				-0.8
1,002,707	+				-0.2
1,002,708	-				+0.5
1,002,739	-				+0.2
1,002,742	+				-1.1
1,002,819	+				-0.2
1,002,822	-				-1.3
1,003,050	-				-1.2
1,003,050	-				-1.3
1,003,051	+				-0.7
1,003,191	+				-0.7
1,003,257	+				-0.1
1,003,298	+				-1.1
1,003,298	+				-0.5
1,003,301	+				-0.7
1,003,301	+				-1.1
1,003,388	-		ABI39_RS03465	0.12	-0.5
1,003,523	+		ABI39_RS03465	0.15	-1.5
1,003,558	-		ABI39_RS03465	0.16	-1.5
1,003,558	-		ABI39_RS03465	0.16	-1.0
1,003,586	+		ABI39_RS03465	0.17	-0.9
1,003,709	-		ABI39_RS03465	0.20	-1.8
1,003,794	+		ABI39_RS03465	0.22	-0.8
1,003,848	+		ABI39_RS03465	0.23	-1.5
1,003,848	+		ABI39_RS03465	0.23	-1.1
1,003,849	-		ABI39_RS03465	0.23	-0.6
1,003,876	-		ABI39_RS03465	0.24	-0.2
1,004,072	-		ABI39_RS03465	0.29	-0.2
1,004,139	-		ABI39_RS03465	0.30	-0.6
1,004,338	-		ABI39_RS03465	0.35	-2.7
1,004,406	+		ABI39_RS03465	0.37	-2.3
1,004,581	-		ABI39_RS03465	0.41	-0.7
1,004,581	-		ABI39_RS03465	0.41	-0.9
1,004,583	-		ABI39_RS03465	0.41	-0.1
1,004,583	-		ABI39_RS03465	0.41	-1.5
1,004,631	-		ABI39_RS03465	0.43	-0.5
1,004,657	-		ABI39_RS03465	0.43	-1.4
1,004,700	-		ABI39_RS03465	0.44	-0.9
1,004,702	-		ABI39_RS03465	0.44	-1.4
1,004,791	+		ABI39_RS03465	0.47	-0.9
1,004,791	+		ABI39_RS03465	0.47	-0.7
1,004,810	+		ABI39_RS03465	0.47	-0.5
1,004,865	+		ABI39_RS03465	0.48	-2.1
1,004,865	-		ABI39_RS03465	0.48	-1.9
1,004,868	-		ABI39_RS03465	0.48	-1.2
1,004,886	+		ABI39_RS03465	0.49	-0.9
1,004,887	-		ABI39_RS03465	0.49	-1.1
1,004,887	-		ABI39_RS03465	0.49	-1.0
1,004,889	-		ABI39_RS03465	0.49	-0.5
1,004,925	+		ABI39_RS03465	0.50	-0.9
1,004,939	-		ABI39_RS03465	0.50	-0.9
1,004,959	+		ABI39_RS03465	0.51	-0.5
1,005,068	+		ABI39_RS03465	0.53	-0.1
1,005,069	-		ABI39_RS03465	0.53	-0.9
1,005,109	+		ABI39_RS03465	0.54	-0.8
1,005,143	+		ABI39_RS03465	0.55	-0.3
1,005,365	+		ABI39_RS03465	0.61	-3.3
1,005,401	+		ABI39_RS03465	0.62	-1.6
1,005,539	+		ABI39_RS03465	0.65	-1.1
1,005,581	+		ABI39_RS03465	0.66	-1.2
1,005,582	-		ABI39_RS03465	0.66	-0.4
1,005,635	+		ABI39_RS03465	0.67	-1.9
1,005,635	+		ABI39_RS03465	0.67	-1.5
1,005,636	-		ABI39_RS03465	0.67	-1.0
1,005,734	+		ABI39_RS03465	0.70	-1.8
1,005,735	-		ABI39_RS03465	0.70	-0.6
1,005,742	+		ABI39_RS03465	0.70	-1.1
1,005,743	-		ABI39_RS03465	0.70	-1.3
1,005,753	-		ABI39_RS03465	0.70	-1.0
1,005,804	+		ABI39_RS03465	0.72	-0.8
1,005,848	+		ABI39_RS03465	0.73	-1.0
1,005,861	+		ABI39_RS03465	0.73	-1.1
1,005,927	+		ABI39_RS03465	0.75	-1.1
1,005,947	-		ABI39_RS03465	0.75	-0.7
1,005,947	-		ABI39_RS03465	0.75	-0.6
1,006,005	-		ABI39_RS03465	0.77	-0.9
1,006,119	+		ABI39_RS03465	0.79	-0.7
1,006,175	+		ABI39_RS03465	0.81	-2.9
1,006,175	+		ABI39_RS03465	0.81	-1.5
1,006,210	+		ABI39_RS03465	0.82	-1.1
1,006,219	-		ABI39_RS03465	0.82	-0.9
1,006,258	+		ABI39_RS03465	0.83	-1.2
1,006,373	+		ABI39_RS03465	0.86	-0.7
1,006,409	+		ABI39_RS03465	0.87	-1.2
1,006,542	-		ABI39_RS03465	0.90	-1.3
1,006,603	-				-1.0
1,006,710	+				-1.8
1,006,851	+				-1.2
1,006,853	+				-0.6
1,006,901	+				-0.9
1,006,902	-				-1.1
1,006,905	+				-0.1
1,006,947	-				-1.1
1,006,993	+				-0.6
1,007,090	+				-0.6
1,007,090	+				-0.5
1,007,100	-				+1.3
1,007,103	+				-0.0
1,007,104	-				+1.2
1,007,132	+				-0.5
1,007,180	-				+1.1
1,007,250	+		ABI39_RS03470	0.11	-0.5
1,007,291	-		ABI39_RS03470	0.13	+0.5
1,007,359	-		ABI39_RS03470	0.17	+0.3
1,007,376	-		ABI39_RS03470	0.17	+1.5
1,007,468	+		ABI39_RS03470	0.22	-0.8
1,007,531	+		ABI39_RS03470	0.25	+0.1
1,007,848	-		ABI39_RS03470	0.41	+0.0
1,007,880	+		ABI39_RS03470	0.43	-0.5