Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS18770

Experiment: D-Raffinose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Raffinose 2.5 mg/ml (C)
4,731,057	+		ABI39_RS18765	0.60	+0.1
4,731,102	+		ABI39_RS18765	0.66	+0.3
4,731,108	-		ABI39_RS18765	0.67	-1.4
4,731,120	+		ABI39_RS18765	0.69	-0.8
4,731,201	-		ABI39_RS18765	0.79	+0.0
4,731,209	+		ABI39_RS18765	0.80	+0.6
4,731,217	-		ABI39_RS18765	0.81	-0.4
4,731,273	+		ABI39_RS18765	0.88	+0.4
4,731,273	+		ABI39_RS18765	0.88	-0.1
4,731,274	-		ABI39_RS18765	0.88	-0.4
4,731,328	+				+0.2
4,731,328	+				+0.2
4,731,328	+				-1.0
4,731,329	-				-0.4
4,731,454	-		ABI39_RS22495	0.31	-0.5
4,731,454	-		ABI39_RS22495	0.31	-1.1
4,731,459	-		ABI39_RS22495	0.33	-0.1
4,731,752	+				-1.3
4,731,779	-				+0.2
4,731,800	-				+0.3
4,731,825	+				-0.7
4,731,825	+				-0.1
4,731,895	+				+0.7
4,731,897	+				-0.1
4,731,898	-				+0.4
4,731,903	+				-0.2
4,731,903	+				-0.4
4,731,903	+				-0.6
4,731,904	-				-0.1
4,731,906	-				-0.7
4,732,050	+				-0.1
4,732,165	-				+0.6
4,732,219	-		ABI39_RS18770	0.13	+0.1
4,732,221	-		ABI39_RS18770	0.14	-1.3
4,732,330	+		ABI39_RS18770	0.23	+0.2
4,732,331	-		ABI39_RS18770	0.23	+0.5
4,732,343	-		ABI39_RS18770	0.24	-0.1
4,732,473	+		ABI39_RS18770	0.34	-0.1
4,732,490	+		ABI39_RS18770	0.36	-1.4
4,732,490	+		ABI39_RS18770	0.36	+0.3
4,732,617	-		ABI39_RS18770	0.46	-0.6
4,732,621	-		ABI39_RS18770	0.47	-0.8
4,732,657	+		ABI39_RS18770	0.50	-1.0
4,732,657	+		ABI39_RS18770	0.50	+0.1
4,732,688	+		ABI39_RS18770	0.52	+0.5
4,732,689	-		ABI39_RS18770	0.52	+0.1
4,732,689	-		ABI39_RS18770	0.52	-0.3
4,732,776	+		ABI39_RS18770	0.59	-0.6
4,733,011	+		ABI39_RS18770	0.79	-0.1
4,733,051	+		ABI39_RS18770	0.82	+0.6
4,733,062	+		ABI39_RS18770	0.83	-0.5
4,733,079	+		ABI39_RS18770	0.84	-0.6
4,733,079	+		ABI39_RS18770	0.84	+0.3
4,733,166	+				-0.1
4,733,166	+				+0.9
4,733,187	-				-0.4
4,733,249	-				+0.7
4,733,285	-				+0.1
4,733,305	-				-0.6
4,733,328	+				-0.2
4,733,414	+				-0.2
4,733,592	-		ABI39_RS18775	0.17	+0.1
4,733,598	-		ABI39_RS18775	0.17	-1.6
4,733,722	+		ABI39_RS18775	0.24	+0.7
4,733,753	-		ABI39_RS18775	0.25	+0.1
4,733,790	+		ABI39_RS18775	0.27	-0.2
4,733,794	+		ABI39_RS18775	0.27	+0.2
4,733,795	-		ABI39_RS18775	0.27	-2.0
4,733,799	-		ABI39_RS18775	0.28	+0.3
4,733,851	-		ABI39_RS18775	0.31	+0.4
4,733,859	+		ABI39_RS18775	0.31	-0.1
4,733,995	-		ABI39_RS18775	0.38	-0.3
4,733,995	-		ABI39_RS18775	0.38	-1.6
4,734,005	+		ABI39_RS18775	0.39	-0.4
4,734,006	-		ABI39_RS18775	0.39	-0.4
4,734,080	-		ABI39_RS18775	0.43	-0.8
4,734,113	+		ABI39_RS18775	0.45	-0.1
4,734,160	-		ABI39_RS18775	0.47	-0.1
4,734,160	-		ABI39_RS18775	0.47	+0.1
4,734,181	-		ABI39_RS18775	0.48	+1.0
4,734,211	-		ABI39_RS18775	0.50	-0.2