Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00435

Experiment: NAG 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG 2.5 mg/ml (C)
121,695	+		ABI39_RS00430	0.76	-0.5
121,716	-		ABI39_RS00430	0.76	-0.5
121,730	-		ABI39_RS00430	0.77	-0.0
121,740	+		ABI39_RS00430	0.77	+0.5
121,765	+		ABI39_RS00430	0.78	+0.7
121,831	-		ABI39_RS00430	0.81	+0.1
121,832	+		ABI39_RS00430	0.81	-1.0
121,934	+		ABI39_RS00430	0.85	-0.5
121,934	+		ABI39_RS00430	0.85	+0.3
121,935	-		ABI39_RS00430	0.85	+0.3
121,980	-		ABI39_RS00430	0.87	-2.2
121,985	-		ABI39_RS00430	0.87	-0.6
122,073	-				+0.4
122,140	+				-1.1
122,199	+				+0.1
122,200	-				+1.1
122,293	-				-0.7
122,412	-				-0.0
122,414	-				-0.1
122,428	+				+0.5
122,429	-				+0.8
122,429	-				-0.4
122,601	+				+1.0
122,729	+				+0.4
122,750	+				+0.5
122,826	+		ABI39_RS00435	0.11	+0.4
122,912	+		ABI39_RS00435	0.17	+0.5
122,930	-		ABI39_RS00435	0.18	+0.6
122,943	+		ABI39_RS00435	0.19	+1.0
123,019	-		ABI39_RS00435	0.24	+1.0
123,283	-		ABI39_RS00435	0.42	+1.4
123,284	+		ABI39_RS00435	0.42	+0.6
123,328	+		ABI39_RS00435	0.45	+0.1
123,396	+		ABI39_RS00435	0.49	+0.3
123,501	+		ABI39_RS00435	0.56	-0.4
123,575	+		ABI39_RS00435	0.61	+0.3
123,612	-		ABI39_RS00435	0.64	+0.6
123,639	+		ABI39_RS00435	0.66	+0.4
123,681	-		ABI39_RS00435	0.68	+0.8
123,721	-		ABI39_RS00435	0.71	+0.5
123,902	+		ABI39_RS00435	0.83	+0.7
123,915	-		ABI39_RS00435	0.84	+0.6
123,915	-		ABI39_RS00435	0.84	-0.5
123,998	-		ABI39_RS00435	0.89	+0.7
124,162	-				-0.8
124,214	+				-0.8
124,252	+				+1.1
124,308	-				+0.1
124,374	+				-0.6
124,375	-				+1.4
124,380	-				-0.1
124,380	-				-0.6
124,380	-				-0.9
124,382	-				-0.8
124,406	+				-0.8
124,413	+				+0.0
124,446	+				+0.7
124,479	+				+0.6
124,480	-				+1.0
124,482	-				-0.4
124,556	+		ABI39_RS00440	0.11	-1.2
124,558	+		ABI39_RS00440	0.11	-0.5
124,579	+		ABI39_RS00440	0.12	+0.0
124,580	-		ABI39_RS00440	0.12	-0.7
124,638	+		ABI39_RS00440	0.14	-0.2
124,639	-		ABI39_RS00440	0.14	+0.2
124,652	+		ABI39_RS00440	0.15	-0.3
124,652	+		ABI39_RS00440	0.15	-0.7
124,652	+		ABI39_RS00440	0.15	-0.3
124,653	-		ABI39_RS00440	0.15	+0.9
124,704	+		ABI39_RS00440	0.17	-0.9
124,705	-		ABI39_RS00440	0.17	-0.4
124,934	-		ABI39_RS00440	0.25	+0.3
124,992	-		ABI39_RS00440	0.27	+0.4
125,118	+		ABI39_RS00440	0.31	-1.4
125,119	-		ABI39_RS00440	0.31	+0.9
125,119	-		ABI39_RS00440	0.31	-0.2