Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS01770

Experiment: NAG 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS01765 and ABI39_RS01770 are separated by 194 nucleotidesABI39_RS01770 and ABI39_RS22955 overlap by 11 nucleotidesABI39_RS22955 and ABI39_RS01775 are separated by 101 nucleotidesABI39_RS01775 and ABI39_RS01780 are separated by 7 nucleotides ABI39_RS01765: ABI39_RS01765 - restriction endonuclease subunit S, at 527,985 to 528,998 _RS01765 ABI39_RS01770: ABI39_RS01770 - IS1595-like element ISBvu2 family transposase, at 529,193 to 530,116 _RS01770 ABI39_RS22955: ABI39_RS22955 - hypothetical protein, at 530,106 to 530,261 _RS22955 ABI39_RS01775: ABI39_RS01775 - hypothetical protein, at 530,363 to 530,815 _RS01775 ABI39_RS01780: ABI39_RS01780 - hypothetical protein, at 530,823 to 531,341 _RS01780 Position (kb) 529 530 531Strain fitness (log2 ratio) -2 -1 0 1 2at 528.248 kb on + strand, within ABI39_RS01765at 528.274 kb on - strand, within ABI39_RS01765at 528.399 kb on - strand, within ABI39_RS01765at 528.416 kb on - strand, within ABI39_RS01765at 528.440 kb on + strand, within ABI39_RS01765at 528.441 kb on - strand, within ABI39_RS01765at 528.443 kb on + strand, within ABI39_RS01765at 528.455 kb on + strand, within ABI39_RS01765at 528.457 kb on + strand, within ABI39_RS01765at 528.606 kb on - strand, within ABI39_RS01765at 528.665 kb on - strand, within ABI39_RS01765at 528.678 kb on - strand, within ABI39_RS01765at 528.686 kb on + strand, within ABI39_RS01765at 528.721 kb on + strand, within ABI39_RS01765at 528.721 kb on + strand, within ABI39_RS01765at 528.841 kb on + strand, within ABI39_RS01765at 528.842 kb on - strand, within ABI39_RS01765at 528.878 kb on - strand, within ABI39_RS01765at 528.879 kb on + strand, within ABI39_RS01765at 528.880 kb on - strand, within ABI39_RS01765at 528.880 kb on - strand, within ABI39_RS01765at 528.933 kb on + strandat 528.966 kb on - strandat 528.966 kb on - strandat 529.013 kb on - strandat 529.346 kb on - strand, within ABI39_RS01770at 529.357 kb on + strand, within ABI39_RS01770at 529.431 kb on - strand, within ABI39_RS01770at 529.436 kb on - strand, within ABI39_RS01770at 529.467 kb on + strand, within ABI39_RS01770at 529.636 kb on + strand, within ABI39_RS01770at 529.670 kb on - strand, within ABI39_RS01770at 529.728 kb on + strand, within ABI39_RS01770at 529.732 kb on - strand, within ABI39_RS01770at 529.797 kb on + strand, within ABI39_RS01770at 529.799 kb on + strand, within ABI39_RS01770at 529.800 kb on - strand, within ABI39_RS01770at 529.801 kb on + strand, within ABI39_RS01770at 529.871 kb on + strand, within ABI39_RS01770at 529.871 kb on + strand, within ABI39_RS01770at 529.874 kb on + strand, within ABI39_RS01770at 529.882 kb on + strand, within ABI39_RS01770at 529.887 kb on - strand, within ABI39_RS01770at 529.887 kb on - strand, within ABI39_RS01770at 529.918 kb on + strand, within ABI39_RS01770at 529.922 kb on - strand, within ABI39_RS01770at 529.965 kb on - strand, within ABI39_RS01770at 529.973 kb on + strand, within ABI39_RS01770at 529.973 kb on + strand, within ABI39_RS01770at 529.974 kb on - strand, within ABI39_RS01770at 529.984 kb on - strand, within ABI39_RS01770at 529.984 kb on - strand, within ABI39_RS01770at 530.091 kb on + strandat 530.160 kb on + strand, within ABI39_RS22955at 530.281 kb on - strandat 530.286 kb on - strandat 530.288 kb on + strandat 530.288 kb on + strandat 530.294 kb on - strandat 530.299 kb on - strandat 530.351 kb on - strandat 530.351 kb on - strandat 530.407 kb on + strandat 530.408 kb on - strandat 530.553 kb on - strand, within ABI39_RS01775at 530.555 kb on - strand, within ABI39_RS01775at 530.555 kb on - strand, within ABI39_RS01775at 530.556 kb on + strand, within ABI39_RS01775at 530.556 kb on + strand, within ABI39_RS01775at 530.618 kb on + strand, within ABI39_RS01775at 530.619 kb on - strand, within ABI39_RS01775at 530.621 kb on + strand, within ABI39_RS01775at 530.623 kb on + strand, within ABI39_RS01775at 530.649 kb on - strand, within ABI39_RS01775at 530.670 kb on - strand, within ABI39_RS01775at 530.716 kb on + strand, within ABI39_RS01775at 530.795 kb on + strandat 530.795 kb on + strandat 530.808 kb on - strandat 530.820 kb on + strandat 530.919 kb on + strand, within ABI39_RS01780at 530.922 kb on - strand, within ABI39_RS01780at 530.961 kb on + strand, within ABI39_RS01780at 531.051 kb on - strand, within ABI39_RS01780at 531.052 kb on + strand, within ABI39_RS01780at 531.052 kb on + strand, within ABI39_RS01780at 531.054 kb on + strand, within ABI39_RS01780at 531.055 kb on - strand, within ABI39_RS01780at 531.057 kb on - strand, within ABI39_RS01780at 531.057 kb on - strand, within ABI39_RS01780at 531.059 kb on - strand, within ABI39_RS01780

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG 2.5 mg/ml (C)
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528,248 + ABI39_RS01765 0.26 +0.1
528,274 - ABI39_RS01765 0.29 +0.1
528,399 - ABI39_RS01765 0.41 -0.4
528,416 - ABI39_RS01765 0.43 +0.4
528,440 + ABI39_RS01765 0.45 -0.6
528,441 - ABI39_RS01765 0.45 -0.1
528,443 + ABI39_RS01765 0.45 +0.9
528,455 + ABI39_RS01765 0.46 -0.2
528,457 + ABI39_RS01765 0.47 -0.8
528,606 - ABI39_RS01765 0.61 +0.3
528,665 - ABI39_RS01765 0.67 +0.5
528,678 - ABI39_RS01765 0.68 +0.7
528,686 + ABI39_RS01765 0.69 +0.5
528,721 + ABI39_RS01765 0.73 +1.4
528,721 + ABI39_RS01765 0.73 -0.8
528,841 + ABI39_RS01765 0.84 -0.6
528,842 - ABI39_RS01765 0.85 -0.1
528,878 - ABI39_RS01765 0.88 +1.1
528,879 + ABI39_RS01765 0.88 +0.2
528,880 - ABI39_RS01765 0.88 +0.6
528,880 - ABI39_RS01765 0.88 +0.2
528,933 + +0.5
528,966 - -0.9
528,966 - +0.1
529,013 - -0.1
529,346 - ABI39_RS01770 0.17 +0.8
529,357 + ABI39_RS01770 0.18 +0.1
529,431 - ABI39_RS01770 0.26 -0.6
529,436 - ABI39_RS01770 0.26 +0.6
529,467 + ABI39_RS01770 0.30 -0.4
529,636 + ABI39_RS01770 0.48 +0.2
529,670 - ABI39_RS01770 0.52 +0.8
529,728 + ABI39_RS01770 0.58 +0.1
529,732 - ABI39_RS01770 0.58 +0.2
529,797 + ABI39_RS01770 0.65 -1.8
529,799 + ABI39_RS01770 0.66 +0.1
529,800 - ABI39_RS01770 0.66 +0.7
529,801 + ABI39_RS01770 0.66 -0.1
529,871 + ABI39_RS01770 0.73 -0.1
529,871 + ABI39_RS01770 0.73 +0.7
529,874 + ABI39_RS01770 0.74 +0.5
529,882 + ABI39_RS01770 0.75 +0.1
529,887 - ABI39_RS01770 0.75 -0.9
529,887 - ABI39_RS01770 0.75 +1.0
529,918 + ABI39_RS01770 0.78 +0.8
529,922 - ABI39_RS01770 0.79 +0.2
529,965 - ABI39_RS01770 0.84 +0.7
529,973 + ABI39_RS01770 0.84 +0.6
529,973 + ABI39_RS01770 0.84 -0.9
529,974 - ABI39_RS01770 0.85 -0.0
529,984 - ABI39_RS01770 0.86 -0.5
529,984 - ABI39_RS01770 0.86 +1.8
530,091 + -0.2
530,160 + ABI39_RS22955 0.35 -0.6
530,281 - -0.5
530,286 - -0.0
530,288 + -0.3
530,288 + -0.3
530,294 - +0.8
530,299 - +0.9
530,351 - +0.0
530,351 - +0.2
530,407 + +0.7
530,408 - +0.2
530,553 - ABI39_RS01775 0.42 -0.5
530,555 - ABI39_RS01775 0.42 +0.6
530,555 - ABI39_RS01775 0.42 +0.4
530,556 + ABI39_RS01775 0.43 -0.3
530,556 + ABI39_RS01775 0.43 +0.1
530,618 + ABI39_RS01775 0.56 +1.2
530,619 - ABI39_RS01775 0.57 -0.4
530,621 + ABI39_RS01775 0.57 +0.2
530,623 + ABI39_RS01775 0.57 +0.4
530,649 - ABI39_RS01775 0.63 -0.9
530,670 - ABI39_RS01775 0.68 -0.2
530,716 + ABI39_RS01775 0.78 +1.3
530,795 + +0.1
530,795 + +0.2
530,808 - -1.5
530,820 + +0.4
530,919 + ABI39_RS01780 0.18 +0.2
530,922 - ABI39_RS01780 0.19 +0.2
530,961 + ABI39_RS01780 0.27 -0.1
531,051 - ABI39_RS01780 0.44 -1.7
531,052 + ABI39_RS01780 0.44 -0.0
531,052 + ABI39_RS01780 0.44 +0.6
531,054 + ABI39_RS01780 0.45 +0.3
531,055 - ABI39_RS01780 0.45 -0.4
531,057 - ABI39_RS01780 0.45 +0.7
531,057 - ABI39_RS01780 0.45 +0.5
531,059 - ABI39_RS01780 0.45 +0.4

Or see this region's nucleotide sequence