Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12715

Experiment: D-Xylose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose 2.5 mg/ml (C)
3,328,651	+				+0.8
3,328,652	-				-0.2
3,328,735	-				+0.8
3,328,784	+				-0.4
3,328,795	+				+0.4
3,328,795	+				+0.7
3,328,806	+				+0.1
3,328,807	-				-0.2
3,328,872	+				+0.4
3,329,035	-		ABI39_RS12710	0.50	+0.4
3,329,049	-		ABI39_RS12710	0.54	+0.4
3,329,119	+		ABI39_RS12710	0.73	+0.5
3,329,120	-		ABI39_RS12710	0.73	-0.4
3,329,147	+		ABI39_RS12710	0.80	+0.1
3,329,151	+		ABI39_RS12710	0.81	+0.5
3,329,472	+				-0.3
3,329,485	+				+0.0
3,329,512	-				-5.0
3,329,539	+				-0.9
3,329,540	-				-4.6
3,329,540	-				-3.4
3,329,607	+				+0.1
3,329,753	+				-4.4
3,329,753	+				-2.8
3,329,801	+				-4.2
3,329,887	-		ABI39_RS12715	0.14	-4.6
3,329,901	+		ABI39_RS12715	0.15	-4.0
3,329,902	-		ABI39_RS12715	0.15	-3.6
3,329,950	+		ABI39_RS12715	0.18	-2.5
3,329,952	+		ABI39_RS12715	0.18	-3.5
3,330,559	-		ABI39_RS12715	0.51	-4.9
3,330,559	-		ABI39_RS12715	0.51	-2.6
3,330,583	+		ABI39_RS12715	0.53	-5.1
3,330,626	+		ABI39_RS12715	0.55	-5.2
3,330,627	-		ABI39_RS12715	0.55	-1.4
3,330,719	+		ABI39_RS12715	0.60	-3.9
3,330,787	-		ABI39_RS12715	0.64	-2.3
3,330,795	-		ABI39_RS12715	0.65	-3.2
3,330,815	-		ABI39_RS12715	0.66	-4.5
3,330,817	-		ABI39_RS12715	0.66	-3.7
3,330,877	-		ABI39_RS12715	0.69	-4.6
3,330,877	-		ABI39_RS12715	0.69	-2.3
3,331,022	+		ABI39_RS12715	0.77	-4.1
3,331,035	-		ABI39_RS12715	0.78	-3.2
3,331,117	+		ABI39_RS12715	0.82	-4.7
3,331,206	+		ABI39_RS12715	0.87	-2.9
3,331,261	-				-3.3
3,331,290	+				-2.8
3,331,390	-				-4.3
3,331,395	-				-3.8
3,331,395	-				-3.5
3,331,627	+				-3.6
3,331,636	+				-4.1
3,331,637	-				-5.2
3,331,651	-				-5.5
3,331,652	+				-2.0
3,331,660	+				-3.3
3,331,666	+				-4.4
3,331,680	+				-4.2
3,331,680	+				-4.9
3,331,810	+		ABI39_RS12720	0.16	-4.4
3,331,956	+		ABI39_RS12720	0.25	-3.6
3,331,982	+		ABI39_RS12720	0.26	-5.4
3,331,987	-		ABI39_RS12720	0.27	-3.2
3,331,987	-		ABI39_RS12720	0.27	-1.9
3,331,991	-		ABI39_RS12720	0.27	-4.9
3,332,057	+		ABI39_RS12720	0.31	-5.8
3,332,091	-		ABI39_RS12720	0.33	-3.2
3,332,224	+		ABI39_RS12720	0.41	-3.4
3,332,255	-		ABI39_RS12720	0.42	-3.9
3,332,296	-		ABI39_RS12720	0.45	-2.1
3,332,311	-		ABI39_RS12720	0.46	-2.6
3,332,314	+		ABI39_RS12720	0.46	-2.0
3,332,315	-		ABI39_RS12720	0.46	-3.8
3,332,315	-		ABI39_RS12720	0.46	-2.8
3,332,417	+		ABI39_RS12720	0.52	-4.4
3,332,417	+		ABI39_RS12720	0.52	-4.1
3,332,418	-		ABI39_RS12720	0.52	-5.0