Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05575

Experiment: D-Xylose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose 2.5 mg/ml (C)
1,542,196	+		ABI39_RS05570	0.66	+0.2
1,542,197	-		ABI39_RS05570	0.66	-0.3
1,542,203	-		ABI39_RS05570	0.67	+0.4
1,542,282	+		ABI39_RS05570	0.74	+0.7
1,542,314	-		ABI39_RS05570	0.76	+0.4
1,542,407	+		ABI39_RS05570	0.85	-0.1
1,542,484	-				-0.0
1,542,549	-				+0.4
1,542,726	-				+0.9
1,542,754	-				+0.4
1,543,075	-				-0.0
1,543,150	+		ABI39_RS05575	0.11	+0.5
1,543,151	-		ABI39_RS05575	0.11	+0.8
1,543,151	-		ABI39_RS05575	0.11	+0.8
1,543,153	+		ABI39_RS05575	0.11	+1.0
1,543,236	+		ABI39_RS05575	0.16	+0.2
1,543,270	+		ABI39_RS05575	0.17	-0.4
1,543,317	-		ABI39_RS05575	0.20	+0.4
1,543,317	-		ABI39_RS05575	0.20	+0.3
1,543,432	+		ABI39_RS05575	0.26	+0.1
1,543,455	+		ABI39_RS05575	0.27	+0.6
1,543,459	+		ABI39_RS05575	0.28	+0.3
1,543,459	+		ABI39_RS05575	0.28	+0.2
1,543,533	+		ABI39_RS05575	0.31	-0.4
1,543,560	+		ABI39_RS05575	0.33	+1.0
1,543,591	+		ABI39_RS05575	0.35	+0.7
1,543,653	+		ABI39_RS05575	0.38	-0.3
1,543,762	+		ABI39_RS05575	0.44	+0.2
1,543,918	+		ABI39_RS05575	0.52	+0.3
1,543,918	+		ABI39_RS05575	0.52	-0.1
1,543,920	+		ABI39_RS05575	0.52	+0.1
1,543,921	-		ABI39_RS05575	0.52	+0.7
1,543,921	-		ABI39_RS05575	0.52	+0.2
1,543,993	-		ABI39_RS05575	0.56	+0.0
1,544,014	-		ABI39_RS05575	0.57	+0.2
1,544,024	+		ABI39_RS05575	0.58	-0.6
1,544,025	-		ABI39_RS05575	0.58	+0.5
1,544,173	+		ABI39_RS05575	0.66	+0.1
1,544,184	-		ABI39_RS05575	0.66	-0.1
1,544,237	-		ABI39_RS05575	0.69	-0.2
1,544,252	+		ABI39_RS05575	0.70	+0.4
1,544,260	-		ABI39_RS05575	0.70	+0.5
1,544,396	+		ABI39_RS05575	0.77	+0.4
1,544,429	-		ABI39_RS05575	0.79	+0.1
1,544,495	+		ABI39_RS05575	0.83	+0.4
1,544,584	+		ABI39_RS05575	0.87	+0.4
1,544,586	+		ABI39_RS05575	0.88	+0.6
1,544,663	+				-0.1
1,544,793	+				+0.5
1,544,794	-				+0.5
1,544,864	-				+0.8
1,544,867	+				+0.6
1,544,868	-				-0.0
1,544,923	-				-1.0
1,544,923	-				-0.3
1,544,927	-				-0.2
1,544,962	+				-0.0
1,545,039	+		ABI39_RS05580	0.10	-0.2
1,545,040	-		ABI39_RS05580	0.10	+0.3
1,545,043	+		ABI39_RS05580	0.11	+0.3
1,545,104	-		ABI39_RS05580	0.28	+0.5
1,545,231	+		ABI39_RS05580	0.62	+0.1
1,545,231	+		ABI39_RS05580	0.62	+0.1
1,545,238	+		ABI39_RS05580	0.64	+0.3
1,545,238	+		ABI39_RS05580	0.64	-0.0
1,545,249	-		ABI39_RS05580	0.67	+0.3
1,545,359	+				+0.0
1,545,448	-		ABI39_RS05585	0.12	+0.5
1,545,515	-		ABI39_RS05585	0.23	+1.0
1,545,515	-		ABI39_RS05585	0.23	+0.5
1,545,678	-		ABI39_RS05585	0.52	+0.2
1,545,691	-		ABI39_RS05585	0.54	+0.3
1,545,692	+		ABI39_RS05585	0.54	-0.3
1,545,738	-		ABI39_RS05585	0.62	+0.4
1,545,756	+		ABI39_RS05585	0.65	-0.1
1,545,817	+		ABI39_RS05585	0.76	-0.6
1,545,818	-		ABI39_RS05585	0.76	-0.0