Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04700

Experiment: D-Xylose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose 2.5 mg/ml (C)
1,315,302	-		ABI39_RS04690	0.77	-1.7
1,315,332	+		ABI39_RS04690	0.79	-4.8
1,315,475	-		ABI39_RS04690	0.86	-2.5
1,315,553	+				-3.6
1,315,632	+				-4.5
1,315,694	-				-2.8
1,315,755	+				-4.6
1,315,759	+				-3.5
1,315,760	-				-0.4
1,315,760	-				-1.8
1,315,766	+				-0.7
1,315,767	-				-0.1
1,315,768	+				-4.3
1,316,028	+		ABI39_RS04695	0.49	-5.1
1,316,028	+		ABI39_RS04695	0.49	-4.2
1,316,029	-		ABI39_RS04695	0.49	-5.7
1,316,029	-		ABI39_RS04695	0.49	-3.7
1,316,030	+		ABI39_RS04695	0.49	-5.5
1,316,030	+		ABI39_RS04695	0.49	-4.7
1,316,196	-		ABI39_RS04695	0.80	-5.2
1,316,271	+				-6.2
1,316,271	+				-3.4
1,316,274	-				-3.9
1,316,274	-				-6.8
1,316,278	+				-3.8
1,316,279	-				-5.7
1,316,290	-				-5.3
1,316,322	+				-4.5
1,316,323	-				+0.0
1,316,494	-				+0.4
1,316,510	+				-3.1
1,316,537	-				+0.1
1,316,591	+		ABI39_RS04700	0.12	-4.0
1,316,616	+		ABI39_RS04700	0.13	-2.5
1,316,714	-		ABI39_RS04700	0.17	-0.3
1,316,907	+		ABI39_RS04700	0.25	-1.1
1,317,289	-		ABI39_RS04700	0.41	-0.3
1,317,312	-		ABI39_RS04700	0.42	-2.6
1,317,592	-		ABI39_RS04700	0.53	+0.3
1,317,715	+		ABI39_RS04700	0.58	-1.1
1,317,869	+		ABI39_RS04700	0.65	-1.7
1,317,872	-		ABI39_RS04700	0.65	-1.5
1,317,876	-		ABI39_RS04700	0.65	+1.3
1,318,189	-		ABI39_RS04700	0.78	-1.1
1,318,661	-				-1.3
1,318,793	-				+0.1
1,318,796	+				-4.5
1,318,797	-				+0.6
1,318,799	+				-4.6
1,318,929	+				+0.1
1,318,980	+				+0.1
1,319,146	-		ABI39_RS04705	0.17	+0.1
1,319,235	+		ABI39_RS04705	0.22	+0.4
1,319,236	-		ABI39_RS04705	0.22	-0.5
1,319,244	-		ABI39_RS04705	0.23	+0.3
1,319,346	+		ABI39_RS04705	0.29	-0.8
1,319,371	-		ABI39_RS04705	0.30	+0.4
1,319,415	+		ABI39_RS04705	0.33	+0.4
1,319,415	+		ABI39_RS04705	0.33	+0.4
1,319,416	-		ABI39_RS04705	0.33	+0.4
1,319,433	-		ABI39_RS04705	0.34	-0.2
1,319,436	+		ABI39_RS04705	0.34	+0.2
1,319,437	-		ABI39_RS04705	0.34	+0.4
1,319,537	+		ABI39_RS04705	0.40	+0.6
1,319,537	+		ABI39_RS04705	0.40	+0.2
1,319,538	-		ABI39_RS04705	0.40	-0.1
1,319,538	-		ABI39_RS04705	0.40	+0.3
1,319,538	-		ABI39_RS04705	0.40	-0.4
1,319,659	-		ABI39_RS04705	0.47	+1.6