Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04145

Experiment: D-Xylose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose 2.5 mg/ml (C)
1,174,185	+		ABI39_RS04135	0.59	+0.9
1,174,194	-		ABI39_RS04135	0.60	+0.4
1,174,212	+		ABI39_RS04135	0.62	+0.9
1,174,369	+		ABI39_RS04135	0.77	+0.1
1,174,369	+		ABI39_RS04135	0.77	+0.6
1,174,374	+		ABI39_RS04135	0.77	+0.3
1,174,374	+		ABI39_RS04135	0.77	+0.5
1,174,407	-		ABI39_RS04135	0.80	+0.6
1,174,428	-		ABI39_RS04135	0.82	+1.1
1,174,430	-		ABI39_RS04135	0.83	+0.7
1,174,443	+		ABI39_RS04135	0.84	-0.2
1,174,444	-		ABI39_RS04135	0.84	+0.9
1,174,449	-		ABI39_RS04135	0.84	+0.1
1,174,449	-		ABI39_RS04135	0.84	-0.3
1,174,449	-		ABI39_RS04135	0.84	+1.1
1,174,481	+		ABI39_RS04135	0.87	+0.5
1,174,481	+		ABI39_RS04135	0.87	+1.1
1,174,524	-				+1.2
1,174,526	+				+0.5
1,174,608	-				+1.1
1,174,676	+				+0.1
1,174,679	-				-0.5
1,174,686	-				+0.1
1,174,701	+				+0.4
1,174,829	-		ABI39_RS04140	0.32	-0.1
1,174,829	-		ABI39_RS04140	0.32	-0.6
1,174,829	-		ABI39_RS04140	0.32	-0.2
1,174,829	-		ABI39_RS04140	0.32	+0.4
1,174,877	-		ABI39_RS04140	0.43	+0.5
1,174,964	-		ABI39_RS04140	0.65	+0.3
1,174,966	-		ABI39_RS04140	0.65	+1.4
1,175,061	+		ABI39_RS04140	0.88	-0.1
1,175,092	+				-0.3
1,175,112	-				-0.3
1,175,113	+				+0.1
1,175,113	+				+1.4
1,175,114	-				+0.2
1,175,117	+				+0.1
1,175,155	+				+0.4
1,175,155	+				+0.4
1,175,156	-				+0.4
1,175,195	+				-1.9
1,175,319	-		ABI39_RS04145	0.34	-2.3
1,175,359	-		ABI39_RS04145	0.43	-0.7
1,175,402	+		ABI39_RS04145	0.52	+1.3
1,175,409	-		ABI39_RS04145	0.54	-1.1
1,175,427	-		ABI39_RS04145	0.57	-1.7
1,175,618	-				+1.3
1,175,624	+				-0.3
1,175,642	-				-0.0
1,175,651	-				-0.3
1,175,659	-				+0.5
1,175,735	-				+0.3
1,175,784	+				+1.1
1,175,891	-				-1.1
1,175,924	-				+0.6
1,175,927	+				-0.4
1,175,932	+				-0.3
1,175,934	+				-0.1
1,175,934	+				+0.1
1,175,934	+				-0.3
1,175,935	-				+0.3
1,175,936	+				+0.3
1,175,955	+		ABI39_RS04150	0.11	+0.6
1,175,966	-		ABI39_RS04150	0.12	+0.1
1,176,070	-		ABI39_RS04150	0.21	+0.4
1,176,070	-		ABI39_RS04150	0.21	+0.2
1,176,073	+		ABI39_RS04150	0.22	-0.9
1,176,077	-		ABI39_RS04150	0.22	-0.4
1,176,127	-		ABI39_RS04150	0.26	+0.3
1,176,128	+		ABI39_RS04150	0.26	+0.3
1,176,221	-		ABI39_RS04150	0.34	+0.1
1,176,271	+		ABI39_RS04150	0.39	-0.4
1,176,294	-		ABI39_RS04150	0.41	+0.0
1,176,305	-		ABI39_RS04150	0.42	+0.1
1,176,305	-		ABI39_RS04150	0.42	-0.1
1,176,307	-		ABI39_RS04150	0.42	+0.6
1,176,478	-		ABI39_RS04150	0.57	-0.1
1,176,478	-		ABI39_RS04150	0.57	+0.1
1,176,502	-		ABI39_RS04150	0.59	+0.9