Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS01165

Experiment: D-Xylose 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS01160 and ABI39_RS01165 are separated by 241 nucleotidesABI39_RS01165 and ABI39_RS01170 are separated by 117 nucleotides ABI39_RS01160: ABI39_RS01160 - alpha-L-fucosidase, at 366,588 to 368,234 _RS01160 ABI39_RS01165: ABI39_RS01165 - helix-turn-helix transcriptional regulator, at 368,476 to 369,336 _RS01165 ABI39_RS01170: ABI39_RS01170 - aldo/keto reductase, at 369,454 to 370,386 _RS01170 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1at 367.535 kb on - strand, within ABI39_RS01160at 367.603 kb on + strand, within ABI39_RS01160at 367.604 kb on - strand, within ABI39_RS01160at 367.781 kb on - strand, within ABI39_RS01160at 367.801 kb on + strand, within ABI39_RS01160at 367.854 kb on - strand, within ABI39_RS01160at 367.962 kb on - strand, within ABI39_RS01160at 367.962 kb on - strand, within ABI39_RS01160at 367.964 kb on - strand, within ABI39_RS01160at 368.067 kb on - strand, within ABI39_RS01160at 368.086 kb on + strandat 368.109 kb on - strandat 368.238 kb on - strandat 368.417 kb on + strandat 368.504 kb on + strandat 368.505 kb on - strandat 368.585 kb on - strand, within ABI39_RS01165at 368.585 kb on - strand, within ABI39_RS01165at 368.589 kb on + strand, within ABI39_RS01165at 368.590 kb on - strand, within ABI39_RS01165at 368.590 kb on - strand, within ABI39_RS01165at 368.640 kb on - strand, within ABI39_RS01165at 368.654 kb on + strand, within ABI39_RS01165at 368.657 kb on - strand, within ABI39_RS01165at 368.683 kb on - strand, within ABI39_RS01165at 368.714 kb on - strand, within ABI39_RS01165at 368.716 kb on + strand, within ABI39_RS01165at 368.725 kb on - strand, within ABI39_RS01165at 368.725 kb on - strand, within ABI39_RS01165at 368.727 kb on - strand, within ABI39_RS01165at 368.729 kb on - strand, within ABI39_RS01165at 368.808 kb on - strand, within ABI39_RS01165at 368.817 kb on + strand, within ABI39_RS01165at 368.818 kb on - strand, within ABI39_RS01165at 368.818 kb on - strand, within ABI39_RS01165at 368.835 kb on - strand, within ABI39_RS01165at 368.958 kb on - strand, within ABI39_RS01165at 368.960 kb on + strand, within ABI39_RS01165at 368.961 kb on - strand, within ABI39_RS01165at 368.961 kb on - strand, within ABI39_RS01165at 368.961 kb on - strand, within ABI39_RS01165at 369.063 kb on + strand, within ABI39_RS01165at 369.064 kb on - strand, within ABI39_RS01165at 369.164 kb on - strand, within ABI39_RS01165at 369.165 kb on + strand, within ABI39_RS01165at 369.198 kb on - strand, within ABI39_RS01165at 369.233 kb on + strand, within ABI39_RS01165at 369.234 kb on - strand, within ABI39_RS01165at 369.238 kb on + strand, within ABI39_RS01165at 369.250 kb on + strand, within ABI39_RS01165at 369.398 kb on + strandat 369.682 kb on + strand, within ABI39_RS01170at 369.801 kb on + strand, within ABI39_RS01170at 369.802 kb on - strand, within ABI39_RS01170at 369.819 kb on - strand, within ABI39_RS01170at 369.828 kb on - strand, within ABI39_RS01170at 369.867 kb on - strand, within ABI39_RS01170at 369.911 kb on + strand, within ABI39_RS01170at 369.911 kb on + strand, within ABI39_RS01170at 369.912 kb on - strand, within ABI39_RS01170at 369.912 kb on - strand, within ABI39_RS01170at 369.976 kb on + strand, within ABI39_RS01170at 370.220 kb on - strand, within ABI39_RS01170at 370.275 kb on + strand, within ABI39_RS01170at 370.275 kb on + strand, within ABI39_RS01170at 370.290 kb on + strand, within ABI39_RS01170at 370.297 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 2.5 mg/ml (C)
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367,535 - ABI39_RS01160 0.57 +0.3
367,603 + ABI39_RS01160 0.62 +0.2
367,604 - ABI39_RS01160 0.62 +0.0
367,781 - ABI39_RS01160 0.72 +1.2
367,801 + ABI39_RS01160 0.74 +0.5
367,854 - ABI39_RS01160 0.77 -0.2
367,962 - ABI39_RS01160 0.83 +0.5
367,962 - ABI39_RS01160 0.83 +0.6
367,964 - ABI39_RS01160 0.84 +0.2
368,067 - ABI39_RS01160 0.90 +0.2
368,086 + -0.8
368,109 - -0.4
368,238 - +0.2
368,417 + +1.0
368,504 + +0.4
368,505 - -0.3
368,585 - ABI39_RS01165 0.13 +0.3
368,585 - ABI39_RS01165 0.13 +0.6
368,589 + ABI39_RS01165 0.13 +0.2
368,590 - ABI39_RS01165 0.13 -0.1
368,590 - ABI39_RS01165 0.13 -0.2
368,640 - ABI39_RS01165 0.19 +0.1
368,654 + ABI39_RS01165 0.21 -1.4
368,657 - ABI39_RS01165 0.21 -0.4
368,683 - ABI39_RS01165 0.24 +0.2
368,714 - ABI39_RS01165 0.28 +0.0
368,716 + ABI39_RS01165 0.28 +0.4
368,725 - ABI39_RS01165 0.29 +0.2
368,725 - ABI39_RS01165 0.29 +0.1
368,727 - ABI39_RS01165 0.29 -1.3
368,729 - ABI39_RS01165 0.29 +0.3
368,808 - ABI39_RS01165 0.39 -1.2
368,817 + ABI39_RS01165 0.40 -0.3
368,818 - ABI39_RS01165 0.40 +0.4
368,818 - ABI39_RS01165 0.40 +0.1
368,835 - ABI39_RS01165 0.42 +0.1
368,958 - ABI39_RS01165 0.56 +1.4
368,960 + ABI39_RS01165 0.56 -1.9
368,961 - ABI39_RS01165 0.56 -1.0
368,961 - ABI39_RS01165 0.56 +0.4
368,961 - ABI39_RS01165 0.56 +0.5
369,063 + ABI39_RS01165 0.68 -0.5
369,064 - ABI39_RS01165 0.68 -0.3
369,164 - ABI39_RS01165 0.80 +0.1
369,165 + ABI39_RS01165 0.80 +0.2
369,198 - ABI39_RS01165 0.84 -0.7
369,233 + ABI39_RS01165 0.88 +0.1
369,234 - ABI39_RS01165 0.88 +0.2
369,238 + ABI39_RS01165 0.89 +0.6
369,250 + ABI39_RS01165 0.90 -0.2
369,398 + -0.5
369,682 + ABI39_RS01170 0.24 +0.3
369,801 + ABI39_RS01170 0.37 +0.6
369,802 - ABI39_RS01170 0.37 +0.1
369,819 - ABI39_RS01170 0.39 -0.7
369,828 - ABI39_RS01170 0.40 -0.0
369,867 - ABI39_RS01170 0.44 -0.5
369,911 + ABI39_RS01170 0.49 -0.3
369,911 + ABI39_RS01170 0.49 +1.5
369,912 - ABI39_RS01170 0.49 -0.0
369,912 - ABI39_RS01170 0.49 +0.3
369,976 + ABI39_RS01170 0.56 -0.1
370,220 - ABI39_RS01170 0.82 +0.2
370,275 + ABI39_RS01170 0.88 -1.5
370,275 + ABI39_RS01170 0.88 +0.3
370,290 + ABI39_RS01170 0.90 +0.5
370,297 + -0.0

Or see this region's nucleotide sequence