Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15620

Experiment: D-Xylose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose 2.5 mg/ml (C)
4,038,431	+				-0.6
4,038,431	+				+0.5
4,038,501	-		ABI39_RS15615	0.24	+0.4
4,038,581	-		ABI39_RS15615	0.56	-0.1
4,038,644	+		ABI39_RS15615	0.81	-0.4
4,038,644	+		ABI39_RS15615	0.81	+0.2
4,038,798	-				+0.2
4,038,930	-				+0.1
4,038,977	-				-0.1
4,039,158	-				-0.4
4,039,266	+				+0.4
4,039,268	+				+0.9
4,039,361	+				-0.4
4,039,363	+				+0.8
4,039,363	+				+1.7
4,039,371	-				-0.4
4,039,403	+				-0.1
4,039,424	+				-1.6
4,039,536	-				-1.4
4,039,627	-		ABI39_RS15620	0.11	-1.5
4,039,645	-		ABI39_RS15620	0.12	-1.1
4,039,646	+		ABI39_RS15620	0.12	-1.5
4,039,653	+		ABI39_RS15620	0.12	-2.3
4,039,713	+		ABI39_RS15620	0.15	-1.6
4,039,866	+		ABI39_RS15620	0.22	-0.8
4,039,916	+		ABI39_RS15620	0.24	-0.7
4,039,950	+		ABI39_RS15620	0.26	-0.2
4,039,967	+		ABI39_RS15620	0.27	-0.0
4,039,968	-		ABI39_RS15620	0.27	-1.2
4,039,971	+		ABI39_RS15620	0.27	-1.4
4,039,972	-		ABI39_RS15620	0.27	-0.9
4,039,972	-		ABI39_RS15620	0.27	+0.3
4,039,972	-		ABI39_RS15620	0.27	+0.0
4,039,991	+		ABI39_RS15620	0.28	-0.2
4,040,081	+		ABI39_RS15620	0.32	-0.3
4,040,087	-		ABI39_RS15620	0.33	-0.5
4,040,121	+		ABI39_RS15620	0.34	-0.9
4,040,123	+		ABI39_RS15620	0.34	-0.4
4,040,160	+		ABI39_RS15620	0.36	-1.2
4,040,213	-		ABI39_RS15620	0.39	+0.1
4,040,245	+		ABI39_RS15620	0.40	-1.0
4,040,246	-		ABI39_RS15620	0.40	+0.1
4,040,246	-		ABI39_RS15620	0.40	-0.0
4,040,249	-		ABI39_RS15620	0.40	-0.4
4,040,255	+		ABI39_RS15620	0.41	-0.3
4,040,306	-		ABI39_RS15620	0.43	-1.0
4,040,310	+		ABI39_RS15620	0.43	-0.2
4,040,423	+		ABI39_RS15620	0.49	-0.8
4,040,497	+		ABI39_RS15620	0.52	-1.4
4,040,497	+		ABI39_RS15620	0.52	+0.1
4,040,498	-		ABI39_RS15620	0.52	-0.5
4,040,498	-		ABI39_RS15620	0.52	-0.2
4,040,505	-		ABI39_RS15620	0.53	-1.2
4,040,536	-		ABI39_RS15620	0.54	-0.3
4,040,563	-		ABI39_RS15620	0.55	-1.1
4,040,565	-		ABI39_RS15620	0.55	+0.6
4,040,592	-		ABI39_RS15620	0.57	-0.9
4,040,618	-		ABI39_RS15620	0.58	-1.4
4,040,640	-		ABI39_RS15620	0.59	-0.8
4,040,731	+		ABI39_RS15620	0.63	-0.8
4,040,732	-		ABI39_RS15620	0.63	-0.2
4,040,825	+		ABI39_RS15620	0.68	-1.4
4,040,826	-		ABI39_RS15620	0.68	-1.3
4,040,826	-		ABI39_RS15620	0.68	+0.1
4,040,859	-		ABI39_RS15620	0.69	-0.2
4,040,879	+		ABI39_RS15620	0.70	-0.8
4,040,915	+		ABI39_RS15620	0.72	-1.2
4,040,990	+		ABI39_RS15620	0.76	-0.9
4,040,990	+		ABI39_RS15620	0.76	-0.8
4,040,990	+		ABI39_RS15620	0.76	-1.0
4,040,990	+		ABI39_RS15620	0.76	-0.6
4,041,113	+		ABI39_RS15620	0.82	+0.2
4,041,114	-		ABI39_RS15620	0.82	-0.4
4,041,114	-		ABI39_RS15620	0.82	-0.0
4,041,126	+		ABI39_RS15620	0.82	-0.0
4,041,303	-				-0.4
4,041,310	+				-0.1
4,041,312	-				-0.7
4,041,345	-				-0.9
4,041,357	+				+0.2
4,041,827	+		ABI39_RS15625	0.74	+0.5
4,041,828	-		ABI39_RS15625	0.74	+0.3
4,041,902	-				+0.3
4,041,921	+				-0.6
4,041,925	-				-0.3
4,041,985	+				+1.1
4,041,988	-				+0.6
4,042,015	-				-0.1
4,042,061	+				+1.2
4,042,114	+				+1.0
4,042,115	-				+0.1
4,042,132	+		ABI39_RS15630	0.11	-0.2
4,042,196	+		ABI39_RS15630	0.17	-0.2
4,042,225	-		ABI39_RS15630	0.19	-0.1
4,042,253	+		ABI39_RS15630	0.21	-1.0
4,042,253	+		ABI39_RS15630	0.21	+0.2
4,042,274	-		ABI39_RS15630	0.23	+0.9
4,042,394	-		ABI39_RS15630	0.33	-0.5
4,042,394	-		ABI39_RS15630	0.33	+0.1
4,042,398	+		ABI39_RS15630	0.33	+1.2
4,042,399	-		ABI39_RS15630	0.34	+0.1
4,042,403	-		ABI39_RS15630	0.34	-2.0