Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS13815

Experiment: D-Xylose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose 2.5 mg/ml (C)
3,589,320	-		ABI39_RS13810	0.58	+0.1
3,589,376	+		ABI39_RS13810	0.64	-1.5
3,589,570	+		ABI39_RS13810	0.83	+0.2
3,589,575	-		ABI39_RS13810	0.83	+0.1
3,589,599	-		ABI39_RS13810	0.86	-1.3
3,589,755	-				+1.4
3,589,771	+				-0.8
3,589,819	-				+0.3
3,589,825	-				+0.5
3,589,835	-				-1.5
3,589,859	-				-0.2
3,589,861	+				-0.3
3,589,862	-				-1.4
3,589,899	+				-1.9
3,589,899	+				-0.3
3,589,917	-		ABI39_RS22145	0.10	+0.7
3,589,978	-		ABI39_RS22145	0.27	-1.0
3,589,986	+		ABI39_RS22145	0.29	+0.3
3,590,092	-		ABI39_RS22145	0.59	-0.0
3,590,113	-		ABI39_RS22145	0.64	+0.1
3,590,212	+				+0.3
3,590,249	-				+0.1
3,590,259	-				-0.6
3,590,284	+				-0.1
3,590,303	-				+0.5
3,590,563	-		ABI39_RS13815	0.13	-1.0
3,590,589	+		ABI39_RS13815	0.14	-0.4
3,590,613	-		ABI39_RS13815	0.15	+0.7
3,590,673	-		ABI39_RS13815	0.18	-0.4
3,590,714	-		ABI39_RS13815	0.20	-0.9
3,590,844	-		ABI39_RS13815	0.26	+0.8
3,590,876	+		ABI39_RS13815	0.27	-1.5
3,590,931	-		ABI39_RS13815	0.30	-0.3
3,590,965	-		ABI39_RS13815	0.31	-2.3
3,591,174	+		ABI39_RS13815	0.41	-0.8
3,591,175	-		ABI39_RS13815	0.41	-1.4
3,591,180	-		ABI39_RS13815	0.41	-1.0
3,591,281	-		ABI39_RS13815	0.46	-0.3
3,591,461	-		ABI39_RS13815	0.54	-0.8
3,591,596	-		ABI39_RS13815	0.60	-0.6
3,591,630	-		ABI39_RS13815	0.62	+0.4
3,591,675	+		ABI39_RS13815	0.64	-0.4
3,591,869	-		ABI39_RS13815	0.73	-0.3
3,591,931	+		ABI39_RS13815	0.76	-0.6
3,591,932	-		ABI39_RS13815	0.76	+0.3
3,591,932	-		ABI39_RS13815	0.76	-0.2
3,591,994	+		ABI39_RS13815	0.79	+0.3
3,592,052	+		ABI39_RS13815	0.82	-1.0
3,592,062	+		ABI39_RS13815	0.82	-0.3
3,592,090	+		ABI39_RS13815	0.83	-0.0
3,592,091	-		ABI39_RS13815	0.83	-0.9
3,592,139	+		ABI39_RS13815	0.86	-1.1
3,592,203	+		ABI39_RS13815	0.89	-1.8
3,592,205	+		ABI39_RS13815	0.89	+0.1
3,592,205	+		ABI39_RS13815	0.89	+0.3
3,592,221	+		ABI39_RS13815	0.89	+0.1
3,592,278	+				-1.0
3,592,286	+				+0.7
3,592,286	+				-1.3
3,592,286	+				-1.2
3,592,286	+				+1.0
3,592,287	-				-0.7
3,592,291	-				+0.7
3,592,490	-				+0.9
3,592,517	+		ABI39_RS13820	0.14	-0.9
3,592,538	-		ABI39_RS13820	0.19	-0.2
3,592,538	-		ABI39_RS13820	0.19	+0.3
3,592,561	+		ABI39_RS13820	0.23	-1.6
3,592,671	-		ABI39_RS13820	0.45	-1.3
3,592,744	+		ABI39_RS13820	0.60	-0.1
3,592,746	+		ABI39_RS13820	0.61	+0.2
3,592,746	+		ABI39_RS13820	0.61	-0.2
3,592,747	-		ABI39_RS13820	0.61	-0.2
3,592,790	+		ABI39_RS13820	0.69	-1.2
3,592,837	+		ABI39_RS13820	0.79	-0.0
3,592,881	-		ABI39_RS13820	0.88	+0.4
3,592,883	+		ABI39_RS13820	0.88	-0.3
3,592,884	-		ABI39_RS13820	0.88	+0.3
3,592,957	+				-0.2
3,593,009	+				+0.3
3,593,056	-				-0.4
3,593,142	+				-0.2
3,593,143	-				+0.7
3,593,182	+				-0.4
3,593,187	-				-0.2
3,593,239	+				+0.1
3,593,309	+				-0.7
3,593,309	+				-1.3
3,593,310	-				+0.6
3,593,310	-				-0.3
3,593,316	+				+0.2
3,593,317	-				+0.3
3,593,375	+		ABI39_RS13825	0.13	-0.6
3,593,379	+		ABI39_RS13825	0.13	-1.6