Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11400

Experiment: D-Xylose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose 2.5 mg/ml (C)
3,029,544	-		ABI39_RS11395	0.44	-1.7
3,029,550	+		ABI39_RS11395	0.45	+0.5
3,029,551	-		ABI39_RS11395	0.45	-0.1
3,029,564	+		ABI39_RS11395	0.45	+0.3
3,029,592	+		ABI39_RS11395	0.47	-0.5
3,029,596	-		ABI39_RS11395	0.47	-0.4
3,029,702	+		ABI39_RS11395	0.54	-0.2
3,029,745	+		ABI39_RS11395	0.56	+0.6
3,029,808	-		ABI39_RS11395	0.60	-1.0
3,029,816	+		ABI39_RS11395	0.61	-0.0
3,029,838	+		ABI39_RS11395	0.62	-0.7
3,029,844	-		ABI39_RS11395	0.63	-0.5
3,029,891	-		ABI39_RS11395	0.65	-1.3
3,029,891	-		ABI39_RS11395	0.65	-0.8
3,030,039	+		ABI39_RS11395	0.74	-1.0
3,030,063	+		ABI39_RS11395	0.76	+0.3
3,030,067	-		ABI39_RS11395	0.76	-0.6
3,030,103	+		ABI39_RS11395	0.78	+0.0
3,030,123	+		ABI39_RS11395	0.80	-0.6
3,030,124	-		ABI39_RS11395	0.80	-0.7
3,030,308	+				-1.1
3,030,447	+				-0.4
3,030,463	+				-1.7
3,030,526	+				-0.1
3,030,666	-		ABI39_RS11400	0.11	-0.8
3,030,669	+		ABI39_RS11400	0.11	-0.9
3,030,670	-		ABI39_RS11400	0.11	-1.1
3,030,670	-		ABI39_RS11400	0.11	-0.4
3,030,670	-		ABI39_RS11400	0.11	+0.2
3,030,670	-		ABI39_RS11400	0.11	-0.9
3,030,693	-		ABI39_RS11400	0.13	+0.3
3,030,693	-		ABI39_RS11400	0.13	-0.9
3,030,696	-		ABI39_RS11400	0.13	-0.6
3,030,723	-		ABI39_RS11400	0.14	-0.8
3,030,723	-		ABI39_RS11400	0.14	-1.3
3,030,723	-		ABI39_RS11400	0.14	-1.5
3,030,732	-		ABI39_RS11400	0.15	-1.3
3,030,737	-		ABI39_RS11400	0.15	-0.4
3,030,744	-		ABI39_RS11400	0.16	-1.3
3,030,806	-		ABI39_RS11400	0.19	-0.0
3,030,820	+		ABI39_RS11400	0.20	+0.2
3,030,934	+		ABI39_RS11400	0.27	-0.9
3,031,034	+		ABI39_RS11400	0.33	-0.6
3,031,035	-		ABI39_RS11400	0.33	-1.6
3,031,036	+		ABI39_RS11400	0.33	-0.4
3,031,038	+		ABI39_RS11400	0.33	-2.2
3,031,038	+		ABI39_RS11400	0.33	-1.8
3,031,043	+		ABI39_RS11400	0.33	-1.5
3,031,096	+		ABI39_RS11400	0.36	-0.1
3,031,135	+		ABI39_RS11400	0.39	-1.0
3,031,141	+		ABI39_RS11400	0.39	-1.3
3,031,163	+		ABI39_RS11400	0.40	-0.7
3,031,166	-		ABI39_RS11400	0.40	-1.1
3,031,384	+		ABI39_RS11400	0.53	-3.8
3,031,385	-		ABI39_RS11400	0.53	-4.7
3,031,461	-		ABI39_RS11400	0.58	-4.0
3,031,715	-		ABI39_RS11400	0.73	-3.6
3,031,743	-		ABI39_RS11400	0.74	-3.5
3,031,792	+		ABI39_RS11400	0.77	+0.9
3,031,835	-		ABI39_RS11400	0.80	-3.3
3,031,836	+		ABI39_RS11400	0.80	-0.2
3,031,854	-		ABI39_RS11400	0.81	-4.2
3,031,979	+		ABI39_RS11400	0.88	+1.4
3,032,017	+				+1.0
3,032,017	+				+1.0
3,032,045	+				+0.7
3,032,049	-				-2.5
3,032,054	+				+0.4
3,032,055	-				-2.6
3,032,166	-				-0.5
3,032,166	-				-0.8
3,032,192	-				-0.9
3,032,196	+				-0.8
3,032,196	+				+0.6
3,032,264	+				+1.0
3,032,393	+		ABI39_RS11405	0.11	-4.9
3,032,473	-		ABI39_RS11405	0.20	-4.5
3,032,498	+		ABI39_RS11405	0.23	-4.2
3,032,551	+		ABI39_RS11405	0.30	-0.3
3,032,602	+		ABI39_RS11405	0.36	-1.3
3,032,615	-		ABI39_RS11405	0.38	-2.2
3,032,625	+		ABI39_RS11405	0.39	-4.7
3,032,670	-		ABI39_RS11405	0.44	-4.1
3,032,681	-		ABI39_RS11405	0.46	+1.2
3,032,813	-		ABI39_RS11405	0.62	-1.9
3,032,813	-		ABI39_RS11405	0.62	-5.1
3,032,822	-		ABI39_RS11405	0.63	-3.9
3,032,835	-		ABI39_RS11405	0.64	-2.5
3,032,839	+		ABI39_RS11405	0.65	-4.8
3,032,844	-		ABI39_RS11405	0.65	-2.9
3,032,858	-		ABI39_RS11405	0.67	-4.2
3,032,888	+		ABI39_RS11405	0.71	-4.1
3,032,889	-		ABI39_RS11405	0.71	-3.5
3,032,889	-		ABI39_RS11405	0.71	-1.8
3,032,901	-		ABI39_RS11405	0.72	-4.0
3,032,901	-		ABI39_RS11405	0.72	-3.9
3,033,004	-		ABI39_RS11405	0.85	-1.6
3,033,011	+		ABI39_RS11405	0.86	-4.5
3,033,014	-		ABI39_RS11405	0.86	-3.3
3,033,073	+				-4.8
3,033,078	-				-3.4
3,033,078	-				-2.8
3,033,078	-				-3.5
3,033,106	-				-4.0
3,033,110	+				-1.8
3,033,111	-				-4.3
3,033,120	+				-4.6
3,033,140	+				-0.8
3,033,141	-				-1.8