Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06350

Experiment: D-Xylose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose 2.5 mg/ml (C)
1,759,537	-		ABI39_RS06345	0.31	-0.7
1,759,679	+		ABI39_RS06345	0.41	-1.1
1,759,683	-		ABI39_RS06345	0.42	-0.3
1,759,689	-		ABI39_RS06345	0.42	+0.1
1,759,759	-		ABI39_RS06345	0.47	+2.1
1,759,809	-		ABI39_RS06345	0.51	+0.4
1,759,809	-		ABI39_RS06345	0.51	+0.3
1,759,916	+		ABI39_RS06345	0.58	+0.8
1,759,917	-		ABI39_RS06345	0.59	+0.0
1,759,972	-		ABI39_RS06345	0.62	-0.2
1,760,061	+		ABI39_RS06345	0.69	-0.0
1,760,061	+		ABI39_RS06345	0.69	+0.4
1,760,062	-		ABI39_RS06345	0.69	-0.7
1,760,062	-		ABI39_RS06345	0.69	+0.1
1,760,087	-		ABI39_RS06345	0.71	+0.3
1,760,166	-		ABI39_RS06345	0.76	-0.1
1,760,312	-		ABI39_RS06345	0.87	-0.1
1,760,476	+				-0.1
1,760,479	-				-0.2
1,760,480	+				-0.3
1,760,480	+				-0.3
1,760,480	+				-0.5
1,760,483	+				+0.0
1,760,484	-				-0.6
1,760,498	+				+0.3
1,760,585	-				+0.3
1,760,585	-				-0.9
1,760,589	-				+1.0
1,760,628	-				-0.7
1,760,639	-		ABI39_RS06350	0.10	+0.5
1,760,668	+		ABI39_RS06350	0.12	-0.0
1,760,669	-		ABI39_RS06350	0.12	+0.1
1,760,674	+		ABI39_RS06350	0.12	+0.0
1,760,730	+		ABI39_RS06350	0.16	+0.0
1,760,731	-		ABI39_RS06350	0.16	-0.2
1,760,871	-		ABI39_RS06350	0.26	+0.1
1,760,900	+		ABI39_RS06350	0.28	-0.4
1,761,177	-		ABI39_RS06350	0.47	-0.0
1,761,185	+		ABI39_RS06350	0.48	-0.0
1,761,214	-		ABI39_RS06350	0.50	+0.3
1,761,287	-		ABI39_RS06350	0.55	-1.1
1,761,290	+		ABI39_RS06350	0.55	+0.3
1,761,290	+		ABI39_RS06350	0.55	+0.1
1,761,357	+		ABI39_RS06350	0.60	-0.4
1,761,358	-		ABI39_RS06350	0.60	-0.1
1,761,402	-		ABI39_RS06350	0.63	-0.1
1,761,436	-		ABI39_RS06350	0.65	-0.6
1,761,501	+		ABI39_RS06350	0.70	-0.7
1,761,502	-		ABI39_RS06350	0.70	+0.2
1,761,578	-		ABI39_RS06350	0.75	+0.1
1,761,582	-		ABI39_RS06350	0.76	+0.1
1,761,582	-		ABI39_RS06350	0.76	+1.2
1,761,583	+		ABI39_RS06350	0.76	+0.0
1,761,665	-		ABI39_RS06350	0.81	-0.3
1,761,720	+		ABI39_RS06350	0.85	+0.4
1,761,854	-				+0.0
1,761,854	-				-0.8
1,761,946	+				-1.1
1,762,054	-				+0.4
1,762,152	-				-0.2
1,762,160	-		ABI39_RS06355	0.10	+0.8
1,762,249	+		ABI39_RS06355	0.22	-0.2
1,762,250	-		ABI39_RS06355	0.22	+0.4
1,762,254	-		ABI39_RS06355	0.22	+0.4
1,762,270	-		ABI39_RS06355	0.24	+0.6
1,762,274	+		ABI39_RS06355	0.25	-0.6
1,762,275	-		ABI39_RS06355	0.25	-1.7
1,762,292	-		ABI39_RS06355	0.27	+0.7
1,762,336	+		ABI39_RS06355	0.32	+0.4
1,762,364	+		ABI39_RS06355	0.36	+0.5
1,762,365	-		ABI39_RS06355	0.36	-2.1
1,762,365	-		ABI39_RS06355	0.36	+0.7
1,762,409	-		ABI39_RS06355	0.41	+0.8
1,762,530	+		ABI39_RS06355	0.56	-0.1
1,762,533	-		ABI39_RS06355	0.57	+0.3
1,762,586	+		ABI39_RS06355	0.63	+0.2
1,762,587	-		ABI39_RS06355	0.64	-0.2
1,762,614	-		ABI39_RS06355	0.67	+0.5
1,762,806	-				-1.3
1,762,832	+				-0.2
1,762,880	-				-0.3
1,762,883	-				+0.3