Experiment: D-Xylose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01055 and ABI39_RS01060 are separated by 4 nucleotides ABI39_RS01060 and ABI39_RS01065 are separated by 73 nucleotides
ABI39_RS01055: ABI39_RS01055 - ABC transporter permease, at 339,147 to 340,403
_RS01055
ABI39_RS01060: ABI39_RS01060 - ABC transporter permease, at 340,408 to 341,649
_RS01060
ABI39_RS01065: ABI39_RS01065 - efflux RND transporter periplasmic adaptor subunit, at 341,723 to 342,817
_RS01065
Position (kb) 340
341
342 Strain fitness (log2 ratio) -1
0
1 at 339.484 kb on - strand, within ABI39_RS01055 at 339.495 kb on + strand, within ABI39_RS01055 at 339.496 kb on - strand, within ABI39_RS01055 at 339.520 kb on + strand, within ABI39_RS01055 at 339.520 kb on + strand, within ABI39_RS01055 at 339.521 kb on - strand, within ABI39_RS01055 at 339.694 kb on + strand, within ABI39_RS01055 at 339.697 kb on + strand, within ABI39_RS01055 at 339.697 kb on + strand, within ABI39_RS01055 at 339.699 kb on + strand, within ABI39_RS01055 at 339.706 kb on + strand, within ABI39_RS01055 at 339.716 kb on - strand, within ABI39_RS01055 at 339.769 kb on + strand, within ABI39_RS01055 at 339.781 kb on - strand, within ABI39_RS01055 at 339.815 kb on + strand, within ABI39_RS01055 at 339.816 kb on - strand, within ABI39_RS01055 at 339.886 kb on + strand, within ABI39_RS01055 at 339.886 kb on + strand, within ABI39_RS01055 at 339.887 kb on - strand, within ABI39_RS01055 at 340.001 kb on - strand, within ABI39_RS01055 at 340.037 kb on - strand, within ABI39_RS01055 at 340.044 kb on - strand, within ABI39_RS01055 at 340.113 kb on - strand, within ABI39_RS01055 at 340.118 kb on + strand, within ABI39_RS01055 at 340.129 kb on + strand, within ABI39_RS01055 at 340.155 kb on - strand, within ABI39_RS01055 at 340.170 kb on + strand, within ABI39_RS01055 at 340.174 kb on + strand, within ABI39_RS01055 at 340.175 kb on - strand, within ABI39_RS01055 at 340.294 kb on + strand at 340.300 kb on + strand at 340.300 kb on + strand at 340.551 kb on + strand, within ABI39_RS01060 at 340.896 kb on - strand, within ABI39_RS01060 at 340.940 kb on - strand, within ABI39_RS01060 at 340.957 kb on - strand, within ABI39_RS01060 at 340.957 kb on - strand, within ABI39_RS01060 at 340.960 kb on + strand, within ABI39_RS01060 at 341.094 kb on + strand, within ABI39_RS01060 at 341.095 kb on - strand, within ABI39_RS01060 at 341.102 kb on + strand, within ABI39_RS01060 at 341.129 kb on + strand, within ABI39_RS01060 at 341.141 kb on + strand, within ABI39_RS01060 at 341.167 kb on + strand, within ABI39_RS01060 at 341.317 kb on - strand, within ABI39_RS01060 at 341.317 kb on - strand, within ABI39_RS01060 at 341.319 kb on + strand, within ABI39_RS01060 at 341.489 kb on + strand, within ABI39_RS01060 at 341.574 kb on - strand at 341.578 kb on - strand at 341.636 kb on + strand at 341.636 kb on + strand at 341.647 kb on + strand at 341.875 kb on + strand, within ABI39_RS01065 at 341.944 kb on - strand, within ABI39_RS01065 at 341.946 kb on - strand, within ABI39_RS01065 at 341.946 kb on - strand, within ABI39_RS01065 at 341.947 kb on + strand, within ABI39_RS01065 at 342.223 kb on + strand, within ABI39_RS01065 at 342.248 kb on - strand, within ABI39_RS01065 at 342.262 kb on + strand, within ABI39_RS01065 at 342.283 kb on - strand, within ABI39_RS01065 at 342.483 kb on + strand, within ABI39_RS01065 at 342.493 kb on - strand, within ABI39_RS01065 at 342.565 kb on + strand, within ABI39_RS01065 at 342.628 kb on - strand, within ABI39_RS01065
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 2.5 mg/ml (C) remove 339,484 - ABI39_RS01055 0.27 -0.4 339,495 + ABI39_RS01055 0.28 +0.6 339,496 - ABI39_RS01055 0.28 +0.5 339,520 + ABI39_RS01055 0.30 -0.3 339,520 + ABI39_RS01055 0.30 +0.0 339,521 - ABI39_RS01055 0.30 +0.1 339,694 + ABI39_RS01055 0.44 +0.5 339,697 + ABI39_RS01055 0.44 +0.2 339,697 + ABI39_RS01055 0.44 +0.8 339,699 + ABI39_RS01055 0.44 +0.1 339,706 + ABI39_RS01055 0.44 -0.2 339,716 - ABI39_RS01055 0.45 -0.4 339,769 + ABI39_RS01055 0.49 +0.5 339,781 - ABI39_RS01055 0.50 +0.3 339,815 + ABI39_RS01055 0.53 -0.5 339,816 - ABI39_RS01055 0.53 +1.0 339,886 + ABI39_RS01055 0.59 +0.8 339,886 + ABI39_RS01055 0.59 -0.0 339,887 - ABI39_RS01055 0.59 -1.3 340,001 - ABI39_RS01055 0.68 -1.3 340,037 - ABI39_RS01055 0.71 -0.9 340,044 - ABI39_RS01055 0.71 -0.7 340,113 - ABI39_RS01055 0.77 -0.3 340,118 + ABI39_RS01055 0.77 +0.0 340,129 + ABI39_RS01055 0.78 +0.2 340,155 - ABI39_RS01055 0.80 +0.1 340,170 + ABI39_RS01055 0.81 +0.2 340,174 + ABI39_RS01055 0.82 +0.4 340,175 - ABI39_RS01055 0.82 +0.5 340,294 + -0.2 340,300 + -0.6 340,300 + -0.0 340,551 + ABI39_RS01060 0.12 -0.9 340,896 - ABI39_RS01060 0.39 -0.2 340,940 - ABI39_RS01060 0.43 +0.5 340,957 - ABI39_RS01060 0.44 +0.4 340,957 - ABI39_RS01060 0.44 +0.6 340,960 + ABI39_RS01060 0.44 +0.1 341,094 + ABI39_RS01060 0.55 -0.3 341,095 - ABI39_RS01060 0.55 -0.4 341,102 + ABI39_RS01060 0.56 +1.0 341,129 + ABI39_RS01060 0.58 -0.1 341,141 + ABI39_RS01060 0.59 +0.4 341,167 + ABI39_RS01060 0.61 +0.0 341,317 - ABI39_RS01060 0.73 +1.4 341,317 - ABI39_RS01060 0.73 +0.0 341,319 + ABI39_RS01060 0.73 -0.8 341,489 + ABI39_RS01060 0.87 -0.5 341,574 - -0.5 341,578 - +0.7 341,636 + -0.4 341,636 + -1.0 341,647 + -0.7 341,875 + ABI39_RS01065 0.14 +0.7 341,944 - ABI39_RS01065 0.20 -0.1 341,946 - ABI39_RS01065 0.20 -0.2 341,946 - ABI39_RS01065 0.20 -0.3 341,947 + ABI39_RS01065 0.20 +0.6 342,223 + ABI39_RS01065 0.46 -0.0 342,248 - ABI39_RS01065 0.48 +0.1 342,262 + ABI39_RS01065 0.49 -0.7 342,283 - ABI39_RS01065 0.51 -0.8 342,483 + ABI39_RS01065 0.69 -0.1 342,493 - ABI39_RS01065 0.70 -0.6 342,565 + ABI39_RS01065 0.77 -0.3 342,628 - ABI39_RS01065 0.83 -0.4
Or see this region's nucleotide sequence