Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20545

Experiment: D-Mannose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 2.5 mg/ml (C)
5,066,117	-		ABI39_RS20540	0.25	-0.2
5,066,192	+		ABI39_RS20540	0.33	-0.1
5,066,198	-		ABI39_RS20540	0.33	-0.0
5,066,205	+		ABI39_RS20540	0.34	+1.2
5,066,243	-		ABI39_RS20540	0.38	-0.5
5,066,292	+		ABI39_RS20540	0.43	-2.1
5,066,295	+		ABI39_RS20540	0.44	+1.3
5,066,296	-		ABI39_RS20540	0.44	+0.7
5,066,297	+		ABI39_RS20540	0.44	+0.5
5,066,458	+		ABI39_RS20540	0.61	-0.1
5,066,458	+		ABI39_RS20540	0.61	+0.5
5,066,459	-		ABI39_RS20540	0.61	-0.6
5,066,459	-		ABI39_RS20540	0.61	+0.4
5,066,459	-		ABI39_RS20540	0.61	+0.3
5,066,459	-		ABI39_RS20540	0.61	-0.2
5,066,459	-		ABI39_RS20540	0.61	+0.5
5,066,460	+		ABI39_RS20540	0.61	+0.0
5,066,460	+		ABI39_RS20540	0.61	-0.5
5,066,461	-		ABI39_RS20540	0.61	-0.2
5,066,461	-		ABI39_RS20540	0.61	+0.4
5,066,499	+		ABI39_RS20540	0.65	-0.3
5,066,528	+		ABI39_RS20540	0.68	+0.1
5,066,529	-		ABI39_RS20540	0.68	+0.6
5,066,529	-		ABI39_RS20540	0.68	+0.9
5,066,616	+		ABI39_RS20540	0.77	+0.2
5,066,620	-		ABI39_RS20540	0.78	-0.6
5,066,731	+		ABI39_RS20540	0.89	+0.4
5,066,731	+		ABI39_RS20540	0.89	-0.2
5,066,733	+		ABI39_RS20540	0.90	+1.3
5,066,801	+				+0.0
5,066,878	+				-0.4
5,066,909	-				+0.0
5,066,909	-				+0.1
5,066,910	+				+1.9
5,066,910	+				+0.1
5,066,911	-				-0.3
5,066,929	-				+1.1
5,066,929	-				+0.3
5,067,040	+		ABI39_RS20545	0.18	-1.5
5,067,045	-		ABI39_RS20545	0.19	+0.1
5,067,045	-		ABI39_RS20545	0.19	+0.1
5,067,067	+		ABI39_RS20545	0.21	+0.1
5,067,091	-		ABI39_RS20545	0.23	-0.3
5,067,302	-		ABI39_RS20545	0.44	+0.3
5,067,312	+		ABI39_RS20545	0.45	+1.1
5,067,413	+		ABI39_RS20545	0.55	+0.5
5,067,461	-		ABI39_RS20545	0.59	+0.3
5,067,462	+		ABI39_RS20545	0.59	-0.2
5,067,462	+		ABI39_RS20545	0.59	-0.2
5,067,586	+		ABI39_RS20545	0.72	+0.5
5,067,688	+		ABI39_RS20545	0.81	+0.2
5,067,706	+		ABI39_RS20545	0.83	-0.5
5,067,707	-		ABI39_RS20545	0.83	-0.6
5,067,895	-				-0.6
5,067,924	-				-0.4
5,067,946	+				+0.5
5,067,950	+				-0.5
5,068,063	-				-0.2
5,068,117	-				+0.8
5,068,119	-				+0.7
5,068,122	+				-0.5
5,068,122	+				-0.7
5,068,122	+				-0.5
5,068,123	-				-0.1
5,068,125	-				-0.1
5,068,144	-				-0.0
5,068,211	+				-1.2
5,068,410	+		ABI39_RS20550	0.27	+0.3
5,068,499	+		ABI39_RS20550	0.34	-0.4
5,068,500	-		ABI39_RS20550	0.34	-1.1
5,068,546	-		ABI39_RS20550	0.38	+0.4
5,068,585	-		ABI39_RS20550	0.42	-1.5
5,068,603	+		ABI39_RS20550	0.43	-0.0
5,068,604	-		ABI39_RS20550	0.43	-0.2
5,068,656	+		ABI39_RS20550	0.48	-0.3
5,068,660	+		ABI39_RS20550	0.48	-0.3
5,068,660	+		ABI39_RS20550	0.48	+0.5
5,068,660	+		ABI39_RS20550	0.48	-0.0
5,068,838	+		ABI39_RS20550	0.64	+1.2
5,068,840	+		ABI39_RS20550	0.64	-0.7