Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20120

Experiment: D-Mannose 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 2.5 mg/ml (C)
4,968,714	-		ABI39_RS20115	0.34	-0.1
4,968,918	+		ABI39_RS20115	0.51	-0.6
4,969,045	+		ABI39_RS20115	0.61	+0.7
4,969,046	-		ABI39_RS20115	0.61	-0.0
4,969,093	+		ABI39_RS20115	0.65	-2.1
4,969,113	-		ABI39_RS20115	0.67	+0.2
4,969,199	-		ABI39_RS20115	0.74	+0.7
4,969,199	-		ABI39_RS20115	0.74	-0.5
4,969,202	+		ABI39_RS20115	0.74	-0.3
4,969,204	+		ABI39_RS20115	0.75	-1.2
4,969,204	+		ABI39_RS20115	0.75	-1.2
4,969,205	-		ABI39_RS20115	0.75	+0.1
4,969,205	-		ABI39_RS20115	0.75	+0.2
4,969,401	+				-0.5
4,969,434	+				-0.4
4,969,435	-				-0.4
4,969,485	+				-0.1
4,969,507	+				-0.3
4,969,508	-				+0.5
4,969,511	+				+0.0
4,969,706	-				+0.8
4,969,763	-				-0.8
4,969,844	+		ABI39_RS20120	0.17	-0.4
4,969,858	+		ABI39_RS20120	0.18	+0.3
4,969,928	+		ABI39_RS20120	0.26	-1.6
4,969,982	+		ABI39_RS20120	0.32	+0.1
4,970,048	-		ABI39_RS20120	0.39	-0.5
4,970,066	-		ABI39_RS20120	0.41	+1.1
4,970,151	-		ABI39_RS20120	0.50	-0.5
4,970,180	-		ABI39_RS20120	0.53	-0.7
4,970,260	+		ABI39_RS20120	0.62	-0.4
4,970,294	-		ABI39_RS20120	0.66	-0.2
4,970,366	-		ABI39_RS20120	0.74	-0.3
4,970,374	-		ABI39_RS20120	0.74	-0.8
4,970,374	-		ABI39_RS20120	0.74	+0.2
4,970,377	+		ABI39_RS20120	0.75	-0.0
4,970,446	+		ABI39_RS20120	0.82	-0.1
4,970,453	-		ABI39_RS20120	0.83	-0.5
4,970,522	+				+0.8
4,970,545	+				+0.3
4,970,546	-				-0.5
4,970,624	+				+1.9
4,970,625	-				-0.5
4,970,643	+				+0.7
4,970,673	-				+0.5
4,970,757	+				-1.1
4,970,796	-		ABI39_RS20125	0.13	-1.5
4,970,828	+		ABI39_RS20125	0.16	+0.9
4,970,856	-		ABI39_RS20125	0.18	+0.7
4,970,965	-		ABI39_RS20125	0.27	-0.6
4,971,150	-		ABI39_RS20125	0.43	-0.1
4,971,237	-		ABI39_RS20125	0.50	-1.1
4,971,253	+		ABI39_RS20125	0.51	-0.7
4,971,277	+		ABI39_RS20125	0.53	-1.5
4,971,314	-		ABI39_RS20125	0.57	+0.0
4,971,442	+		ABI39_RS20125	0.67	-0.4
4,971,514	-		ABI39_RS20125	0.73	-0.1