Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24835

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttraB and traK overlap by 1 nucleotides NOLOHH_24830: traB - Protein TraB, at 102,129 to 103,556 traB NOLOHH_24835: traK - type-F conjugative transfer system secretin TraK, at 103,556 to 104,284 traK Position (kb) 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1at 102.668 kb on + strand, within traBat 102.669 kb on - strand, within traBat 102.669 kb on - strand, within traBat 102.669 kb on - strand, within traBat 102.711 kb on - strand, within traBat 102.714 kb on + strand, within traBat 102.715 kb on - strand, within traBat 102.715 kb on - strand, within traBat 102.715 kb on - strand, within traBat 102.715 kb on - strand, within traBat 102.781 kb on + strand, within traBat 102.781 kb on + strand, within traBat 102.782 kb on - strand, within traBat 102.782 kb on - strand, within traBat 102.782 kb on - strand, within traBat 102.782 kb on - strand, within traBat 102.782 kb on - strand, within traBat 102.789 kb on - strand, within traBat 102.919 kb on + strand, within traBat 102.919 kb on + strand, within traBat 102.919 kb on + strand, within traBat 102.920 kb on - strand, within traBat 103.000 kb on + strand, within traBat 103.000 kb on + strand, within traBat 103.241 kb on + strand, within traBat 103.303 kb on + strand, within traBat 103.303 kb on + strand, within traBat 103.462 kb on + strandat 103.462 kb on + strandat 103.463 kb on - strandat 103.463 kb on - strandat 103.463 kb on - strandat 103.463 kb on - strandat 103.463 kb on - strandat 103.519 kb on + strandat 103.541 kb on + strandat 103.584 kb on + strandat 103.584 kb on + strandat 103.584 kb on + strandat 103.585 kb on - strandat 103.585 kb on - strandat 103.585 kb on - strandat 103.585 kb on - strandat 103.585 kb on - strandat 103.611 kb on - strandat 103.611 kb on - strandat 103.946 kb on - strand, within traKat 104.017 kb on + strand, within traKat 104.017 kb on + strand, within traKat 104.074 kb on + strand, within traKat 104.132 kb on - strand, within traKat 104.258 kb on + strandat 104.259 kb on - strandat 104.262 kb on - strandat 104.262 kb on - strandat 104.273 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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102,668 + traB NOLOHH_24830 0.38 -0.2
102,669 - traB NOLOHH_24830 0.38 -0.2
102,669 - traB NOLOHH_24830 0.38 -0.3
102,669 - traB NOLOHH_24830 0.38 +0.9
102,711 - traB NOLOHH_24830 0.41 +0.8
102,714 + traB NOLOHH_24830 0.41 +0.9
102,715 - traB NOLOHH_24830 0.41 +0.0
102,715 - traB NOLOHH_24830 0.41 +1.6
102,715 - traB NOLOHH_24830 0.41 +0.5
102,715 - traB NOLOHH_24830 0.41 -0.1
102,781 + traB NOLOHH_24830 0.46 +0.1
102,781 + traB NOLOHH_24830 0.46 -1.0
102,782 - traB NOLOHH_24830 0.46 -0.5
102,782 - traB NOLOHH_24830 0.46 -1.3
102,782 - traB NOLOHH_24830 0.46 +0.9
102,782 - traB NOLOHH_24830 0.46 +0.4
102,782 - traB NOLOHH_24830 0.46 +1.0
102,789 - traB NOLOHH_24830 0.46 -0.1
102,919 + traB NOLOHH_24830 0.55 +0.0
102,919 + traB NOLOHH_24830 0.55 -0.1
102,919 + traB NOLOHH_24830 0.55 +0.2
102,920 - traB NOLOHH_24830 0.55 +0.2
103,000 + traB NOLOHH_24830 0.61 -0.2
103,000 + traB NOLOHH_24830 0.61 -0.2
103,241 + traB NOLOHH_24830 0.78 +0.1
103,303 + traB NOLOHH_24830 0.82 -0.8
103,303 + traB NOLOHH_24830 0.82 -0.9
103,462 + +0.3
103,462 + +0.3
103,463 - -0.6
103,463 - -1.0
103,463 - +0.0
103,463 - +0.9
103,463 - -0.2
103,519 + -1.2
103,541 + +0.2
103,584 + -0.1
103,584 + -0.0
103,584 + -0.5
103,585 - +1.3
103,585 - +0.2
103,585 - +0.1
103,585 - +0.8
103,585 - +0.3
103,611 - +1.0
103,611 - +0.2
103,946 - traK NOLOHH_24835 0.53 -2.2
104,017 + traK NOLOHH_24835 0.63 -2.8
104,017 + traK NOLOHH_24835 0.63 +0.1
104,074 + traK NOLOHH_24835 0.71 -1.4
104,132 - traK NOLOHH_24835 0.79 +0.3
104,258 + +1.4
104,259 - +0.9
104,262 - -1.2
104,262 - -0.9
104,273 - -0.0

Or see this region's nucleotide sequence