Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24770

Experiment: Bas37

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttrbA and traF are separated by 15 nucleotidestraF and NOLOHH_24770 overlap by 8 nucleotidesNOLOHH_24770 and traN are separated by 26 nucleotides NOLOHH_24760: trbA - conjugal transfer protein TrbA, at 91,611 to 91,958 trbA NOLOHH_24765: traF - type-F conjugative transfer system pilin assembly protein TraF, at 91,974 to 92,717 traF NOLOHH_24770: NOLOHH_24770 - conjugal transfer protein TrbE, at 92,710 to 92,967 _24770 NOLOHH_24775: traN - type-F conjugative transfer system mating-pair stabilization protein TraN, at 92,994 to 94,802 traN Position (kb) 92 93Strain fitness (log2 ratio) -1 0 1 2at 91.810 kb on + strand, within trbAat 91.813 kb on - strand, within trbAat 91.875 kb on - strand, within trbAat 92.105 kb on - strand, within traFat 92.193 kb on - strand, within traFat 92.207 kb on - strand, within traFat 92.207 kb on - strand, within traFat 92.374 kb on + strand, within traFat 92.374 kb on + strand, within traFat 92.385 kb on - strand, within traFat 92.385 kb on - strand, within traFat 92.385 kb on - strand, within traFat 92.386 kb on + strand, within traFat 92.387 kb on - strand, within traFat 92.387 kb on - strand, within traFat 92.476 kb on + strand, within traFat 92.477 kb on - strand, within traFat 92.477 kb on - strand, within traFat 92.511 kb on - strand, within traFat 92.511 kb on - strand, within traFat 92.511 kb on - strand, within traFat 92.511 kb on - strand, within traFat 92.511 kb on - strand, within traFat 92.883 kb on + strand, within NOLOHH_24770at 92.957 kb on - strandat 92.995 kb on + strandat 92.995 kb on + strandat 93.191 kb on + strand, within traNat 93.256 kb on + strand, within traNat 93.256 kb on + strand, within traNat 93.411 kb on - strand, within traNat 93.506 kb on + strand, within traNat 93.507 kb on - strand, within traNat 93.507 kb on - strand, within traNat 93.507 kb on - strand, within traNat 93.557 kb on + strand, within traNat 93.656 kb on - strand, within traNat 93.656 kb on - strand, within traNat 93.664 kb on + strand, within traNat 93.665 kb on - strand, within traNat 93.665 kb on - strand, within traNat 93.694 kb on + strand, within traNat 93.742 kb on + strand, within traNat 93.743 kb on - strand, within traNat 93.781 kb on + strand, within traNat 93.781 kb on + strand, within traNat 93.781 kb on + strand, within traNat 93.781 kb on + strand, within traNat 93.781 kb on + strand, within traNat 93.782 kb on - strand, within traNat 93.782 kb on - strand, within traNat 93.782 kb on - strand, within traNat 93.782 kb on - strand, within traNat 93.812 kb on - strand, within traNat 93.866 kb on + strand, within traNat 93.867 kb on - strand, within traNat 93.931 kb on + strand, within traNat 93.941 kb on - strand, within traN

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
remove
91,810 + trbA NOLOHH_24760 0.57 -0.6
91,813 - trbA NOLOHH_24760 0.58 +0.1
91,875 - trbA NOLOHH_24760 0.76 +1.3
92,105 - traF NOLOHH_24765 0.18 -0.3
92,193 - traF NOLOHH_24765 0.29 +1.4
92,207 - traF NOLOHH_24765 0.31 +0.7
92,207 - traF NOLOHH_24765 0.31 +1.0
92,374 + traF NOLOHH_24765 0.54 -0.6
92,374 + traF NOLOHH_24765 0.54 -0.8
92,385 - traF NOLOHH_24765 0.55 -0.2
92,385 - traF NOLOHH_24765 0.55 +0.2
92,385 - traF NOLOHH_24765 0.55 +1.1
92,386 + traF NOLOHH_24765 0.55 -0.3
92,387 - traF NOLOHH_24765 0.56 +0.7
92,387 - traF NOLOHH_24765 0.56 +0.1
92,476 + traF NOLOHH_24765 0.67 +0.2
92,477 - traF NOLOHH_24765 0.68 +0.4
92,477 - traF NOLOHH_24765 0.68 -0.9
92,511 - traF NOLOHH_24765 0.72 -0.3
92,511 - traF NOLOHH_24765 0.72 +1.0
92,511 - traF NOLOHH_24765 0.72 +1.1
92,511 - traF NOLOHH_24765 0.72 +0.3
92,511 - traF NOLOHH_24765 0.72 -0.7
92,883 + NOLOHH_24770 0.67 -1.0
92,957 - +0.5
92,995 + +0.3
92,995 + -0.4
93,191 + traN NOLOHH_24775 0.11 -0.7
93,256 + traN NOLOHH_24775 0.14 +0.5
93,256 + traN NOLOHH_24775 0.14 -0.6
93,411 - traN NOLOHH_24775 0.23 +0.9
93,506 + traN NOLOHH_24775 0.28 +0.6
93,507 - traN NOLOHH_24775 0.28 -0.1
93,507 - traN NOLOHH_24775 0.28 +0.2
93,507 - traN NOLOHH_24775 0.28 +2.4
93,557 + traN NOLOHH_24775 0.31 +0.4
93,656 - traN NOLOHH_24775 0.37 +0.4
93,656 - traN NOLOHH_24775 0.37 +0.0
93,664 + traN NOLOHH_24775 0.37 +0.3
93,665 - traN NOLOHH_24775 0.37 +0.1
93,665 - traN NOLOHH_24775 0.37 +0.5
93,694 + traN NOLOHH_24775 0.39 -0.3
93,742 + traN NOLOHH_24775 0.41 +0.7
93,743 - traN NOLOHH_24775 0.41 +0.2
93,781 + traN NOLOHH_24775 0.44 +1.0
93,781 + traN NOLOHH_24775 0.44 -0.0
93,781 + traN NOLOHH_24775 0.44 +0.6
93,781 + traN NOLOHH_24775 0.44 +0.2
93,781 + traN NOLOHH_24775 0.44 +0.4
93,782 - traN NOLOHH_24775 0.44 -0.2
93,782 - traN NOLOHH_24775 0.44 +0.5
93,782 - traN NOLOHH_24775 0.44 +0.0
93,782 - traN NOLOHH_24775 0.44 -1.4
93,812 - traN NOLOHH_24775 0.45 -1.0
93,866 + traN NOLOHH_24775 0.48 -0.6
93,867 - traN NOLOHH_24775 0.48 +0.5
93,931 + traN NOLOHH_24775 0.52 +0.8
93,941 - traN NOLOHH_24775 0.52 -0.2

Or see this region's nucleotide sequence