Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24570

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_24565 and NOLOHH_24570 are separated by 185 nucleotidesNOLOHH_24570 and NOLOHH_24575 are separated by 83 nucleotides NOLOHH_24565: NOLOHH_24565 - accessory colonization factor AcfC, at 57,119 to 57,868 _24565 NOLOHH_24570: NOLOHH_24570 - Alpha/beta hydrolase, at 58,054 to 58,758 _24570 NOLOHH_24575: NOLOHH_24575 - Aldehyde dehydrogenase, at 58,842 to 60,362 _24575 Position (kb) 58 59Strain fitness (log2 ratio) -2 -1 0 1at 57.355 kb on - strand, within NOLOHH_24565at 57.523 kb on + strand, within NOLOHH_24565at 57.552 kb on + strand, within NOLOHH_24565at 57.553 kb on - strand, within NOLOHH_24565at 57.669 kb on + strand, within NOLOHH_24565at 57.670 kb on - strand, within NOLOHH_24565at 57.742 kb on + strand, within NOLOHH_24565at 57.743 kb on - strand, within NOLOHH_24565at 57.745 kb on + strand, within NOLOHH_24565at 57.759 kb on + strand, within NOLOHH_24565at 58.260 kb on - strand, within NOLOHH_24570at 58.270 kb on - strand, within NOLOHH_24570at 59.274 kb on + strand, within NOLOHH_24575

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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57,355 - NOLOHH_24565 0.31 -0.5
57,523 + NOLOHH_24565 0.54 -0.1
57,552 + NOLOHH_24565 0.58 +1.3
57,553 - NOLOHH_24565 0.58 +0.7
57,669 + NOLOHH_24565 0.73 +1.5
57,670 - NOLOHH_24565 0.73 -0.5
57,742 + NOLOHH_24565 0.83 -2.3
57,743 - NOLOHH_24565 0.83 +1.2
57,745 + NOLOHH_24565 0.83 -1.8
57,759 + NOLOHH_24565 0.85 -0.5
58,260 - NOLOHH_24570 0.29 -1.2
58,270 - NOLOHH_24570 0.31 -0.0
59,274 + NOLOHH_24575 0.28 +1.6

Or see this region's nucleotide sequence