Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt traY and traJ are separated by 135 nucleotides traJ and NOLOHH_24235 are separated by 190 nucleotides NOLOHH_24235 and NOLOHH_24240 are separated by 432 nucleotides
NOLOHH_24220: traY - conjugal transfer relaxosome protein TraY, at 1,262 to 1,477
traY
NOLOHH_24225: traJ - conjugal transfer transcriptional regulator TraJ, at 1,613 to 2,260
traJ
NOLOHH_24235: NOLOHH_24235 - conjugal transfer protein TraM, at 2,451 to 2,834
_24235
NOLOHH_24240: NOLOHH_24240 - transglycosylase SLT domain-containing protein, at 3,267 to 3,776
_24240
Position (kb) 2
3 Strain fitness (log2 ratio) -1
0
1 at 1.998 kb on - strand, within traJ at 2.260 kb on + strand at 2.260 kb on + strand at 2.261 kb on - strand at 2.261 kb on - strand at 2.261 kb on - strand at 2.261 kb on - strand at 2.369 kb on + strand at 2.371 kb on + strand at 2.511 kb on - strand, within NOLOHH_24235 at 2.564 kb on + strand, within NOLOHH_24235 at 3.506 kb on + strand, within NOLOHH_24240 at 3.681 kb on + strand, within NOLOHH_24240
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 1,998 - traJ NOLOHH_24225 0.59 +0.6 2,260 + +0.1 2,260 + +0.3 2,261 - -0.1 2,261 - -1.4 2,261 - +1.6 2,261 - -0.9 2,369 + +0.4 2,371 + -0.9 2,511 - NOLOHH_24235 0.16 -1.2 2,564 + NOLOHH_24235 0.29 -1.2 3,506 + NOLOHH_24240 0.47 +0.2 3,681 + NOLOHH_24240 0.81 -0.3
Or see this region's nucleotide sequence