Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20670

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdhaK and dhaL are separated by 10 nucleotidesdhaL and dhaM are separated by 10 nucleotides NOLOHH_20665: dhaK - dihydroxyacetone kinase subunit DhaK, at 4,068,309 to 4,069,379 dhaK NOLOHH_20670: dhaL - dihydroxyacetone kinase subunit DhaL, at 4,069,390 to 4,070,022 dhaL NOLOHH_20675: dhaM - dihydroxyacetone kinase phosphoryl donor subunit DhaM, at 4,070,033 to 4,071,451 dhaM Position (kb) 4069 4070 4071Strain fitness (log2 ratio) -1 0 1at 4068.409 kb on - strandat 4068.496 kb on - strand, within dhaKat 4068.498 kb on - strand, within dhaKat 4068.642 kb on - strand, within dhaKat 4068.735 kb on + strand, within dhaKat 4068.772 kb on + strand, within dhaKat 4069.050 kb on + strand, within dhaKat 4069.197 kb on + strand, within dhaKat 4069.303 kb on + strandat 4069.364 kb on + strandat 4069.564 kb on - strand, within dhaLat 4069.708 kb on + strand, within dhaLat 4069.947 kb on + strand, within dhaLat 4070.310 kb on + strand, within dhaMat 4070.310 kb on + strand, within dhaMat 4070.541 kb on + strand, within dhaMat 4070.566 kb on + strand, within dhaMat 4070.989 kb on + strand, within dhaMat 4070.997 kb on + strand, within dhaM

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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4,068,409 - +1.0
4,068,496 - dhaK NOLOHH_20665 0.17 +0.1
4,068,498 - dhaK NOLOHH_20665 0.18 +0.9
4,068,642 - dhaK NOLOHH_20665 0.31 +0.5
4,068,735 + dhaK NOLOHH_20665 0.40 -1.0
4,068,772 + dhaK NOLOHH_20665 0.43 +0.2
4,069,050 + dhaK NOLOHH_20665 0.69 -1.1
4,069,197 + dhaK NOLOHH_20665 0.83 -0.1
4,069,303 + -1.3
4,069,364 + -1.4
4,069,564 - dhaL NOLOHH_20670 0.27 -1.0
4,069,708 + dhaL NOLOHH_20670 0.50 -0.1
4,069,947 + dhaL NOLOHH_20670 0.88 -0.0
4,070,310 + dhaM NOLOHH_20675 0.20 -0.4
4,070,310 + dhaM NOLOHH_20675 0.20 +1.6
4,070,541 + dhaM NOLOHH_20675 0.36 +0.4
4,070,566 + dhaM NOLOHH_20675 0.38 -1.1
4,070,989 + dhaM NOLOHH_20675 0.67 -0.0
4,070,997 + dhaM NOLOHH_20675 0.68 +0.3

Or see this region's nucleotide sequence