Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_20425 and NOLOHH_20430 overlap by 25 nucleotides NOLOHH_20430 and ychE are separated by 26 nucleotides ychE and ychT are separated by 30 nucleotides ychT and adhE are separated by 392 nucleotides
NOLOHH_20425: NOLOHH_20425 - hypothetical protein, at 4,021,040 to 4,021,201
_20425
NOLOHH_20430: NOLOHH_20430 - hypothetical protein, at 4,021,177 to 4,021,332
_20430
NOLOHH_20435: ychE - NAAT family transporter YchE, at 4,021,359 to 4,022,006
ychE
NOLOHH_20440: ychT - Protein YchT, at 4,022,037 to 4,022,090
ychT
NOLOHH_20445: adhE - bifunctional acetaldehyde-CoA/alcohol dehydrogenase, at 4,022,483 to 4,025,158
adhE
Position (kb) 4022
4023 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4021.059 kb on - strand, within NOLOHH_20425 at 4021.104 kb on - strand, within NOLOHH_20425 at 4021.142 kb on - strand, within NOLOHH_20425 at 4021.321 kb on + strand at 4021.443 kb on - strand, within ychE at 4021.443 kb on - strand, within ychE at 4021.443 kb on - strand, within ychE at 4021.522 kb on - strand, within ychE at 4021.522 kb on - strand, within ychE at 4021.566 kb on - strand, within ychE at 4021.666 kb on - strand, within ychE at 4021.838 kb on + strand, within ychE at 4021.838 kb on + strand, within ychE at 4021.839 kb on - strand, within ychE at 4021.898 kb on - strand, within ychE at 4021.926 kb on - strand, within ychE at 4022.045 kb on - strand, within ychT at 4022.045 kb on - strand, within ychT at 4022.190 kb on - strand at 4022.196 kb on + strand at 4022.201 kb on - strand at 4022.201 kb on - strand at 4022.491 kb on + strand at 4022.779 kb on + strand, within adhE at 4022.884 kb on + strand, within adhE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 4,021,059 - NOLOHH_20425 0.12 +0.4 4,021,104 - NOLOHH_20425 0.40 -0.3 4,021,142 - NOLOHH_20425 0.63 +0.3 4,021,321 + -0.2 4,021,443 - ychE NOLOHH_20435 0.13 +1.6 4,021,443 - ychE NOLOHH_20435 0.13 +1.2 4,021,443 - ychE NOLOHH_20435 0.13 +1.7 4,021,522 - ychE NOLOHH_20435 0.25 -0.7 4,021,522 - ychE NOLOHH_20435 0.25 +1.4 4,021,566 - ychE NOLOHH_20435 0.32 +2.6 4,021,666 - ychE NOLOHH_20435 0.47 -0.5 4,021,838 + ychE NOLOHH_20435 0.74 +0.1 4,021,838 + ychE NOLOHH_20435 0.74 +0.1 4,021,839 - ychE NOLOHH_20435 0.74 +0.6 4,021,898 - ychE NOLOHH_20435 0.83 +1.6 4,021,926 - ychE NOLOHH_20435 0.88 +0.1 4,022,045 - ychT NOLOHH_20440 0.15 -1.0 4,022,045 - ychT NOLOHH_20440 0.15 -1.0 4,022,190 - +0.6 4,022,196 + -2.2 4,022,201 - -0.7 4,022,201 - -0.3 4,022,491 + -1.4 4,022,779 + adhE NOLOHH_20445 0.11 +0.5 4,022,884 + adhE NOLOHH_20445 0.15 +1.5
Or see this region's nucleotide sequence