Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20195

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpdeR and yciZ are separated by 146 nucleotidesyciZ and yciT are separated by 89 nucleotides NOLOHH_20190: pdeR - cyclic di-GMP phosphodiesterase, at 3,977,100 to 3,979,085 pdeR NOLOHH_20195: yciZ - UPF0509 protein YciZ, at 3,979,232 to 3,979,405 yciZ NOLOHH_20200: yciT - DNA-binding transcriptional regulator YciT, at 3,979,495 to 3,980,244 yciT Position (kb) 3979 3980Strain fitness (log2 ratio) -1 0 1 2at 3979.267 kb on + strand, within yciZat 3979.332 kb on + strand, within yciZat 3979.336 kb on + strand, within yciZat 3979.403 kb on + strandat 3979.702 kb on + strand, within yciTat 3979.702 kb on + strand, within yciTat 3979.705 kb on - strand, within yciTat 3979.929 kb on + strand, within yciT

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,979,267 + yciZ NOLOHH_20195 0.20 -0.9
3,979,332 + yciZ NOLOHH_20195 0.57 -0.9
3,979,336 + yciZ NOLOHH_20195 0.60 -1.6
3,979,403 + +0.3
3,979,702 + yciT NOLOHH_20200 0.28 +0.7
3,979,702 + yciT NOLOHH_20200 0.28 +2.1
3,979,705 - yciT NOLOHH_20200 0.28 +1.7
3,979,929 + yciT NOLOHH_20200 0.58 -1.0

Or see this region's nucleotide sequence