Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sieB and kilR are separated by 318 nucleotides kilR and ydaE overlap by 1 nucleotides ydaE and racC are separated by 74 nucleotides racC and NOLOHH_19840 are separated by 101 nucleotides
NOLOHH_19820: sieB - Superinfection exclusion protein B, at 3,905,879 to 3,906,490
sieB
NOLOHH_19825: kilR - killing protein KilR, at 3,906,809 to 3,907,030
kilR
NOLOHH_19830: ydaE - Uncharacterized protein YdaE, at 3,907,030 to 3,907,200
ydaE
NOLOHH_19835: racC - Protein RacC, at 3,907,275 to 3,907,550
racC
NOLOHH_19840: NOLOHH_19840 - exonuclease VIII, at 3,907,652 to 3,910,252
_19840
Position (kb)
3907
3908 Strain fitness (log2 ratio)
-1
0
1 at 3906.308 kb on - strand, within sieB at 3906.356 kb on + strand, within sieB at 3906.386 kb on + strand, within sieB at 3907.360 kb on + strand, within racC at 3907.520 kb on - strand, within racC at 3907.763 kb on + strand at 3908.002 kb on + strand, within NOLOHH_19840 at 3908.106 kb on + strand, within NOLOHH_19840 at 3908.130 kb on + strand, within NOLOHH_19840 at 3908.286 kb on - strand, within NOLOHH_19840 at 3908.496 kb on - strand, within NOLOHH_19840
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 3,906,308 - sieB NOLOHH_19820 0.70 +0.8 3,906,356 + sieB NOLOHH_19820 0.78 +0.5 3,906,386 + sieB NOLOHH_19820 0.83 -0.5 3,907,360 + racC NOLOHH_19835 0.31 +0.3 3,907,520 - racC NOLOHH_19835 0.89 -0.9 3,907,763 + +0.8 3,908,002 + NOLOHH_19840 0.13 +0.3 3,908,106 + NOLOHH_19840 0.17 +1.1 3,908,130 + NOLOHH_19840 0.18 +1.4 3,908,286 - NOLOHH_19840 0.24 -0.6 3,908,496 - NOLOHH_19840 0.32 +1.5
Or see this region's nucleotide sequence