Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19835

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsieB and kilR are separated by 318 nucleotideskilR and ydaE overlap by 1 nucleotidesydaE and racC are separated by 74 nucleotidesracC and NOLOHH_19840 are separated by 101 nucleotides NOLOHH_19820: sieB - Superinfection exclusion protein B, at 3,905,879 to 3,906,490 sieB NOLOHH_19825: kilR - killing protein KilR, at 3,906,809 to 3,907,030 kilR NOLOHH_19830: ydaE - Uncharacterized protein YdaE, at 3,907,030 to 3,907,200 ydaE NOLOHH_19835: racC - Protein RacC, at 3,907,275 to 3,907,550 racC NOLOHH_19840: NOLOHH_19840 - exonuclease VIII, at 3,907,652 to 3,910,252 _19840 Position (kb) 3907 3908Strain fitness (log2 ratio) -1 0 1at 3906.308 kb on - strand, within sieBat 3906.356 kb on + strand, within sieBat 3906.386 kb on + strand, within sieBat 3907.360 kb on + strand, within racCat 3907.520 kb on - strand, within racCat 3907.763 kb on + strandat 3908.002 kb on + strand, within NOLOHH_19840at 3908.106 kb on + strand, within NOLOHH_19840at 3908.130 kb on + strand, within NOLOHH_19840at 3908.286 kb on - strand, within NOLOHH_19840at 3908.496 kb on - strand, within NOLOHH_19840

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,906,308 - sieB NOLOHH_19820 0.70 +0.8
3,906,356 + sieB NOLOHH_19820 0.78 +0.5
3,906,386 + sieB NOLOHH_19820 0.83 -0.5
3,907,360 + racC NOLOHH_19835 0.31 +0.3
3,907,520 - racC NOLOHH_19835 0.89 -0.9
3,907,763 + +0.8
3,908,002 + NOLOHH_19840 0.13 +0.3
3,908,106 + NOLOHH_19840 0.17 +1.1
3,908,130 + NOLOHH_19840 0.18 +1.4
3,908,286 - NOLOHH_19840 0.24 -0.6
3,908,496 - NOLOHH_19840 0.32 +1.5

Or see this region's nucleotide sequence